Pairwise Alignments

Query, 327 a.a., C4-dicarboxylate ABC transporter from Pseudomonas simiae WCS417

Subject, 344 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  128 bits (322), Expect = 2e-34
 Identities = 95/331 (28%), Positives = 164/331 (49%), Gaps = 11/331 (3%)

Query: 4   LSRALLCAA-TLFAAGLAQAADPIVIKFAHVVAENT--PKGQGALLFKKLAQERLPGRVK 60
           L+ AL  AA  +   G AQ+      ++   +   T  P G+   ++  L +ER  GR+ 
Sbjct: 7   LTTALAAAALAVTTQGFAQSTSAYKAEYRMSLVLGTAFPWGKSGEIWSNLVRERTQGRIN 66

Query: 61  VEVYPNSSLF-GDG-KEMEALLLGDVQMLAPSLAKFEQYTQQVQIYDLPFLFNDLAAVDR 118
           +++YP  SL  GD  +E   L  G + +   S   +    +Q+ ++ +PFL  D AA+D 
Sbjct: 67  IKLYPGVSLLQGDQTREFSGLRQGVIDLAVGSTINWSPQVRQLNLFSMPFLMPDFAAIDA 126

Query: 119 FQAAQ-GKALLTAMQDKNILGLAYWHNGLKQLSSNK-ALHEPKDARGLKFRVQASSVLEE 176
               + G  L   ++    + LA+  NG +++S++K A+  P D +GLK RV  S +  +
Sbjct: 127 LTTGEVGTQLFKDIERAGAVPLAWGENGYREISNSKHAIKTPADLKGLKIRVVGSPLFLD 186

Query: 177 QFKAIRANPRKMSFAEVYQGLQTGTVNGTENTWSNYESQKVNEV-QKYFTESNHGLIDYM 235
            F A+ ANP +MS+A+    + +  V+G EN  S + + K+  V QK+ T   +     +
Sbjct: 187 TFTALGANPTQMSWADAQPAMASRAVDGQENPLSVFLAAKLPTVEQKHLTLWGYVADPLI 246

Query: 236 VITNATFWNGLPPDIRSTLEQIMVEVTVEVNKQA-EALNQSAKQ--KIIDAKTSEIIELT 292
            + N   W       R+ ++Q  ++   E    A + L +  K   K +      + ELT
Sbjct: 247 FVVNKDIWASWTEADRAIVKQAAIDAGKEGKALARKGLVEPGKPLIKQLSDMGVTVTELT 306

Query: 293 PEQRQLWREAMRPVWQKFEGEIGADLIKAAD 323
           PEQR  + +  RPV+ K++ +IGADL+  A+
Sbjct: 307 PEQRAEFVKVTRPVYDKWKNQIGADLVTKAE 337