Pairwise Alignments

Query, 426 a.a., C4-dicarboxylate ABC transporter permease from Pseudomonas simiae WCS417

Subject, 429 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  297 bits (760), Expect = 5e-85
 Identities = 167/429 (38%), Positives = 260/429 (60%), Gaps = 16/429 (3%)

Query: 6   LFLLLFVFMFLGVPIAISLGLSGAVSILMFSQDSVSSLAI--KLFETSDAYTFLAIPFFL 63
           L L+    M +G PIA ++ ++G V++ +  +  +SSL +   LF   D++  +AIPFF+
Sbjct: 5   LGLVFLALMVIGAPIAFAMLIAGLVAVWL--KPGLSSLVVMQNLFSGLDSFPLMAIPFFI 62

Query: 64  LSGAFMTTGGVAQRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVGSIAV 123
           L+   MT G +   L+ FA   VG  RGGL  A +L    F+ +SGS+ A  A  G++ +
Sbjct: 63  LAAELMTGGALTDVLLKFAARLVGMRRGGLGHANILTLTFFSGISGSALADAAGPGAMLI 122

Query: 124 AGMVRSGYPKAFGAGIICNAGTLGILIPPSIVMVVYSAATET-SVGKLFMAGVIPGLLLG 182
             M ++GY  ++ A +  +   +G +IPPSI+M+VY+    + S+  LF+AGV+PG L+ 
Sbjct: 123 KMMRKAGYKDSYAAALTASTAIVGPIIPPSIIMIVYAMTDNSVSITGLFLAGVVPGFLIA 182

Query: 183 LMLMIAIYIVARIKKLPAQPRATFREWLTSAR--RAFW----GLLLLVIILGGIYSGMFT 236
           L LM+  +IV+  +   + P     E L  A   R FW     L+L VIILGGI+ G+FT
Sbjct: 183 LSLMVVNHIVSVRRGYRSSP-----ELLDPAPLLRLFWRALPALMLPVIILGGIHLGIFT 237

Query: 237 PTEAAAVAAVYSAFVALFIYKDMQLRDCPKVLLESGRLAIMLMFIIANAMLFAHVLTTEQ 296
           PTEA+A A +Y+  V  F+Y  +++   P +L  S  +   ++FI+A + +FA VLT  Q
Sbjct: 238 PTEASAAAVLYALLVGRFVYGTLRMDMLPAILFRSALMTASILFIVATSAVFAWVLTVGQ 297

Query: 297 IPQEITAWVLSEGLTPIGFLIMVNVVLLIAGSFMEPSAIVLILAPIFFPIAMKLGIDPIH 356
           IPQ + AW+    L+PI  LI +NV+LL+ G F+EP   V+I+ PI  P+A   G++ +H
Sbjct: 298 IPQTMAAWIAGMALSPIELLIAINVLLLLVGIFIEPLPGVMIMVPILGPLAEAAGLNSLH 357

Query: 357 LGIVMVVNMEIGLVHPPVGLNLFVTSAVTGLTLGQTIRAALPWLMILLVFLIMVTYLPFI 416
             IV++VN+ +G+V PPVG  LFVTSAV+G+ +G  +R  +P L+ L   L+++T++P  
Sbjct: 358 FAIVVIVNLTLGMVTPPVGGLLFVTSAVSGVRMGPMVREMVPMLVALFTVLMLLTFVPAF 417

Query: 417 SLALPHWLG 425
           S  LP  LG
Sbjct: 418 STWLPGVLG 426