Pairwise Alignments

Query, 426 a.a., C4-dicarboxylate ABC transporter permease from Pseudomonas simiae WCS417

Subject, 433 a.a., C4-dicarboxylate TRAP transporter large permease protein DctM from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  323 bits (829), Expect = 5e-93
 Identities = 173/428 (40%), Positives = 271/428 (63%), Gaps = 3/428 (0%)

Query: 1   MAVLCLFLLLFVFMFLGVPIAISLGLS--GAVSILMFSQDSVSSLAIKLFETSDAYTFLA 58
           + ++ LF   F  + LGVPI  ++GLS   ++S  +    ++S ++ KL    D++T LA
Sbjct: 5   LPIIVLFGAFFFMLALGVPIVYAIGLSTLASISTQLDFNSALSVVSQKLASGLDSFTLLA 64

Query: 59  IPFFLLSGAFMTTGGVAQRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAV 118
           IPFF+LSG  M  GG+A+RLI+FA    G + G LA   +LA MLF A+SGS+ A+ AA+
Sbjct: 65  IPFFILSGNIMNHGGIARRLINFARILGGRLPGSLAHCNILANMLFGAISGSAVASAAAM 124

Query: 119 GSIAVAGMVRSGYPKAFGAGIICNAGTLGILIPPSIVMVVYSAATE-TSVGKLFMAGVIP 177
           G +     V+ GY  AF   +   +   G+LIPPS  ++VYS  +  TS+  LF+AG +P
Sbjct: 125 GGVMHPQQVKEGYDPAFSTAVNVASAPTGLLIPPSNTLIVYSLVSGGTSIAALFLAGYVP 184

Query: 178 GLLLGLMLMIAIYIVARIKKLPAQPRATFREWLTSARRAFWGLLLLVIILGGIYSGMFTP 237
           G+LLGL LM+   I+A  +  P   R T R+   +   A   + L+++I+GG+ SG+FTP
Sbjct: 185 GILLGLALMVIAGIIAVRRGYPKPERPTLRQAGVAIWMAIPSIFLIILIMGGVLSGIFTP 244

Query: 238 TEAAAVAAVYSAFVALFIYKDMQLRDCPKVLLESGRLAIMLMFIIANAMLFAHVLTTEQI 297
           TEA+A+A +Y+ F+AL +Y+++ ++D PK+ LES     +++ +I ++M  +  ++   +
Sbjct: 245 TEASAIAVIYTLFLALVLYREISVKDLPKIFLESVITTAIVLLLIGSSMGMSWAMSNADV 304

Query: 298 PQEITAWVLSEGLTPIGFLIMVNVVLLIAGSFMEPSAIVLILAPIFFPIAMKLGIDPIHL 357
           P  I   + +    PI  L+++N++LLI G+FM+ +  VLI  PIF P+  +LG+DPIH 
Sbjct: 305 PFLILDLLNTISDNPIIILLIINIILLIIGTFMDMTPAVLIFTPIFLPVVTELGMDPIHF 364

Query: 358 GIVMVVNMEIGLVHPPVGLNLFVTSAVTGLTLGQTIRAALPWLMILLVFLIMVTYLPFIS 417
           GIVMV+NM IG+  PPVG  LFV  +V+ L + + I+  LP+  ++++ L MVTY+P IS
Sbjct: 365 GIVMVLNMCIGICTPPVGSVLFVGCSVSKLPINKIIKPMLPFYAVMVLVLAMVTYIPQIS 424

Query: 418 LALPHWLG 425
           +ALP  LG
Sbjct: 425 MALPRALG 432