Pairwise Alignments

Query, 664 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  223 bits (568), Expect = 2e-62
 Identities = 140/401 (34%), Positives = 231/401 (57%), Gaps = 8/401 (1%)

Query: 269 SEFDNQGVASTFYMRPIA--GTPWFLATALPTALITAQRDDVLG---TLALLQIPMVLLL 323
           ++F N  +AS   ++ +   GT    A+ + TA  T  RD       TL  +   + L L
Sbjct: 240 TQFGNAQLASEQALQRMVEQGTVLLQASQMMTASQTEVRDAAAAQAKTLLTVATVLALAL 299

Query: 324 VLLAVYAI-RQLVQRMKSLKTNIDALSTGDADLTRRITIRAEDELGAIGHSVNRFIVYLQ 382
            LLA +AI RQ++  ++      + +++GD  LT+ + ++  DELG +  S++R    L+
Sbjct: 300 GLLAAWAITRQIIIPLRQTLRAAERVASGD--LTQSLQVQRRDELGQLQASMHRMTQGLR 357

Query: 383 NMIGEVTQATGAMSSSLEQLQRTSAHTNQILVRHASETDQTVTAITEMSSTADTVAQNAA 442
            +IG +      ++S+ E+L   +  T+  +     ETDQ  TA+ +M++T   VA+NA 
Sbjct: 358 ELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVHEVARNAE 417

Query: 443 ETAAFTQRANEHADRSRVVVGEASNSVSALIGEVSSATHSVENMRQDAARITETLGVIGA 502
           + +     A++ A     VVGEA   +  L  EV +++ ++  ++ ++ +I   L VI +
Sbjct: 418 QASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGSVLDVIKS 477

Query: 503 IAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTSQINEMLTRLTAGVSS 562
           +A QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ ST +I E++  L +G   
Sbjct: 478 VAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELIAGLQSGTQR 537

Query: 563 SVAAMENTQASCQSAADATARVNTGLDEMAGSVSHINNLSTQIATAAEQQSAVTEEINRS 622
             + M+N++    S+ + T R  + L+ +  +VS I  ++ QIATAAE+Q+AV EEINRS
Sbjct: 538 VASVMDNSRQLTDSSVELTRRAGSSLETITRTVSSIQAMNQQIATAAEEQTAVAEEINRS 597

Query: 623 MVQIRQMVEELVQSGHATETNTQSLLDANGRVIALMGRFKV 663
           ++ +R + ++   +   T +++  L      +  L+GRF++
Sbjct: 598 VMNVRDISDQTSAASEETASSSVELARLGTHLQGLVGRFRL 638



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 53/245 (21%)

Query: 449 QRANEHADRSRVVVGEASNSVSALIGEVSSATHSVENMRQDAARITETLGVIGAIAGQTN 508
           ++A++  + SR V+G +++    LIG V  +     N+ Q                   +
Sbjct: 127 KQADQRREASRDVLGSSADKAVDLIGRVQRSLLQGANINQ-----------------YQH 169

Query: 509 LLALNAAIEAARAGEQGRGFAVVAD--------------EVRALAARTQASTSQINEMLT 554
            + ++A ++ AR   +G  ++  AD              E+RAL A+  A  +   +   
Sbjct: 170 AVDVSALLQQARFQVRGYTYSGNADYQQTALKAIDQALAELRALPAKVPAEHAASLDDAA 229

Query: 555 RLTAGVSSSVAAMENTQASCQSAADATARVNTGL---------------DEMAGSVSHIN 599
               G   +V    N Q + + A        T L               D  A     + 
Sbjct: 230 TAMGGYRDAVTQFGNAQLASEQALQRMVEQGTVLLQASQMMTASQTEVRDAAAAQAKTLL 289

Query: 600 NLSTQIATAAEQQS--AVTEEINRSMVQIRQMVE--ELVQSGHATETNTQSLLDANGRVI 655
            ++T +A A    +  A+T +I   ++ +RQ +   E V SG  T++      D  G++ 
Sbjct: 290 TVATVLALALGLLAAWAITRQI---IIPLRQTLRAAERVASGDLTQSLQVQRRDELGQLQ 346

Query: 656 ALMGR 660
           A M R
Sbjct: 347 ASMHR 351