Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 293 a.a., Putative aliphatic sulfonates transport permease protein SsuC from Xanthobacter sp. DMC5

 Score =  129 bits (325), Expect = 5e-35
 Identities = 78/246 (31%), Positives = 128/246 (52%), Gaps = 8/246 (3%)

Query: 4   RELPGWLLGLSGLAGLLLLWWLGVKV-FGATDGLSARFSVAATFTSLWELLGRGELYLHI 62
           R L  W L L    G+L LW     + F ++  L A   VA  F   W  LG G L  ++
Sbjct: 39  RALLPWALPL----GVLALWQAAASLGFLSSRVLPAPSDVAVAF---WRTLGDGSLLANV 91

Query: 63  AVSLKRIFVGLFLALLVGVPLGLVVGSSRKLEAATTPAFQFLRMISPLSWMPIVVMLMGV 122
           AVS +R  +GL +   +G  LG++ G  R  E A     Q LR +  L+ +P+V++  G+
Sbjct: 92  AVSTRRALIGLAIGGSIGFALGVLNGIVRPAETAFDSTMQMLRNVPHLAIIPLVILWFGI 151

Query: 123 GDQPIYFLLAFAAVWPIMLNTAAGVRQLDPRWLQLSSSLSATRWETLRRVIIPGVVGHVL 182
           G++   FL+A    +PI LNT  G+R +D   ++++     +      R+++PG +  VL
Sbjct: 152 GEEAKIFLVAIGVAFPIYLNTFHGIRTVDRGLVEMARVYGLSSTALFWRIVLPGALPSVL 211

Query: 183 TGVRLAIGILWIVLVPCEMLGVSAGLGYYILDTRDRLAYSELMAMVLLIGLLGFALDALA 242
            G+R A+GI+W+ L+  E +  + G+GY  ++ R+ L    ++  VL   LLG   D+  
Sbjct: 212 VGLRYALGIMWLTLIVAETISSTEGIGYMTMNAREFLQTDVVVLGVLAYALLGKLADSFT 271

Query: 243 RWLHQR 248
           R + +R
Sbjct: 272 RAIERR 277