Pairwise Alignments

Query, 335 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 328 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

 Score =  100 bits (248), Expect = 7e-26
 Identities = 80/308 (25%), Positives = 127/308 (41%), Gaps = 9/308 (2%)

Query: 30  VGFLLLEHFSLPAFTQTLDTFVTANLLRPDLFASRTFGCDDGEVI--SDLGLVIRPDARI 87
           V  +L     L   T  +D F  AN   P     R     +G+ +     GL +  D R+
Sbjct: 10  VAMVLFNDVLLLDVTGPMDAFAIANRFLPAARQYRLLTLAEGQAVVRGSCGLKVVADRRL 69

Query: 88  DVAALQDLELLVICGGFRTELKASEDFIHLLRGAAEQGISLAGLWNGAWFLGRAGLLQGY 147
           +    + ++LL++ GG      A       L  A  Q      +  G + LGRAGLL GY
Sbjct: 70  EDLP-EAVDLLLVPGGPGAYDIALPGIERWLPKAVRQAKRFGAICTGVFLLGRAGLLNGY 128

Query: 148 RCAIHPEHRPALGEVSKATHVTSEP-YVIDRDRLTASSPSGAFHMALDWIKGLHGKALVE 206
           RC  H  +   L +      V +E  YV+DR  +T+   +    +AL  +   HGKAL  
Sbjct: 129 RCTTHWNYVERLAQAFPEAKVETEQIYVMDRCLITSGGITAGIDLALAVVAEDHGKALAL 188

Query: 207 GIEDILAFEESRYRRIKPTENVSVS-----APLREVVKLMDANLEEPLELDQLAVYAGRS 261
            +  +L     R     P   +  +     +P+  V   +  ++E+   + ++A     S
Sbjct: 189 EVAKVLLVARHRQGGQTPYGPLLAAVPRDDSPIARVQAYIVDHIEQAFTVQKMAELVAMS 248

Query: 262 RRQLERLFKEQLGTTPQRYYMELRVTEARRLLQHTELSQVEVLVACGFVSPSHFSKCYSS 321
            R   R F  ++G TP +Y    R+   R+LL+  +L    V   CGF S  H  K +  
Sbjct: 249 GRNFARTFLREVGITPLQYLQNARIDRTRKLLECGDLPMKVVAAQCGFGSDRHMRKVFFE 308

Query: 322 YFGYRPSK 329
             G  P++
Sbjct: 309 RIGMTPAQ 316