Pairwise Alignments

Query, 539 a.a., aspartate:proton symporter from Pseudomonas simiae WCS417

Subject, 472 a.a., L-alanine and D-alanine permease (from data) from Pseudomonas simiae WCS417

 Score =  112 bits (279), Expect = 4e-29
 Identities = 99/362 (27%), Positives = 163/362 (45%), Gaps = 40/362 (11%)

Query: 5   GKFKKQLSLMDLTFIGLGAIFGSGWLFAASHVSAIAGPAGIISWLIGGFAVLLLGIVYCE 64
           G  K++L    +  + LGA  G G    ++    +AGPA ++S++IGG A+L++     E
Sbjct: 16  GPLKRELGERHIRLMALGACIGVGLFLGSAKAIEMAGPAIMLSYIIGGLAILVIMRALGE 75

Query: 65  LGAALPRAGGVVRYPVYSHGPLLGYLMGFITLIAFSSLVAIEVVASRQYAAAWFPELTKA 124
           +    P AG   RY     GPL G+L G+     +      E+ A   Y   WFP+    
Sbjct: 76  MAVHNPVAGSFSRYAQDYLGPLAGFLTGWNYWFLWLVTCVAEITAVAVYMGVWFPD---- 131

Query: 125 GSSDPTTLGWLVQFALLCLFFVLNYRSVKTFAIANNLVSVFKF--IVPLLVIGVLFTFFK 182
                 T  W+   A L     +N  +VK F       ++ K   I+ +++ GV    F 
Sbjct: 132 ------TPRWIWALAALISMGSINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFG 185

Query: 183 PANFQVQ----------GFAPFGLSGIEMAVSAGGVIFAYLGLTPIISVASEVKNPQRTI 232
             N  V           GF P G+ G+ M++    V+FAYLG+  I   A E KNPQ+TI
Sbjct: 186 FGNDGVALGISNLWAHGGFMPNGVQGVLMSLQM--VMFAYLGVEMIGLTAGEAKNPQKTI 243

Query: 233 PIALILSVLLSTAIYVLLQTAFLGGVPTEMLANGWAGISKE---LALPYRDIALALGVGW 289
           P A+        +++  +   ++G +   +    W  I  +     + +  + +    G 
Sbjct: 244 PSAI-------GSVFWRILLFYVGALFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGI 296

Query: 290 LAYLVVADAVISPSGCGNIYMNATPRVVYGWAQTGTFFKIFTRIDEKSGIPRPALWLT-F 348
           + ++V+  A+ S +  G I+  +T R++Y  AQ G     F +    +G+PR AL L+ F
Sbjct: 297 INFVVITAALSSCN--GGIF--STGRMLYSLAQNGQAPATFAK-TSSNGVPRKALLLSIF 351

Query: 349 AL 350
           AL
Sbjct: 352 AL 353



 Score = 25.4 bits (54), Expect = 0.005
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 365 INVVSAALILSYAVAPVTVAALRRNAPQMARPFRVKG------MAVLGPLSFIIAALIVY 418
           I +   A++LSY +  + +  + R   +MA    V G         LGPL+  +     Y
Sbjct: 48  IEMAGPAIMLSYIIGGLAILVIMRALGEMAVHNPVAGSFSRYAQDYLGPLAGFLTGW-NY 106

Query: 419 WSGW--NTVSWLLGLQILMFVVYLLCARWV 446
           W  W    V+ +  + + M V +    RW+
Sbjct: 107 WFLWLVTCVAEITAVAVYMGVWFPDTPRWI 136