Pairwise Alignments

Query, 308 a.a., recombinase from Pseudomonas simiae WCS417

Subject, 316 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

 Score =  400 bits (1027), Expect = e-116
 Identities = 190/301 (63%), Positives = 233/301 (77%), Gaps = 2/301 (0%)

Query: 1   MSDLDRYLNAATRDNTRRSYRAAIEHFEVSWGGFLPATSASVARYLVAHAGVLAVNTLKL 60
           M+D++RYL AATRDNTRRSY+AAIEHFE  WGGFLPAT+ S+ARYL  HA   AV+TL+ 
Sbjct: 1   MTDIERYLRAATRDNTRRSYQAAIEHFESHWGGFLPATAESIARYLADHADQHAVSTLRQ 60

Query: 61  RLSALAQWHTSQGFPDPTKAPVVRKVLKGIRAVHPAQEKQAEPLQLKHLEQVVASLESEA 120
           RL+AL+QWH +QGFPDPTKAP+VR+VL+GIR +HP   KQA PL L+HL+  V   E EA
Sbjct: 61  RLAALSQWHVAQGFPDPTKAPLVRQVLRGIRTLHPTPPKQAAPLLLQHLQTAVTCFEEEA 120

Query: 121 KAAA--HDLPRLLRAKRDTALILLGFWRGFRSDELCRLEIEHVHATPGAGISVYLPRSKS 178
           + A   HDL  L RA+RD+AL+LLGFWRGFR DEL RL IEH+ A  G GI+++LPRSK 
Sbjct: 121 RQAREHHDLAALRRARRDSALLLLGFWRGFRGDELARLRIEHIQAQAGVGITLFLPRSKG 180

Query: 179 DRDNLGKTYHTPALLRLCPVQAYNEWLSASALVRGPVFRGIDRWGNLGEEGLHPNSVIPL 238
           DR+ LG  + TPAL  LCPV AY +WL  + +  GPVFR +DRWGNLG+  L+ NS++ L
Sbjct: 181 DREALGVQHRTPALKALCPVTAYLQWLEVAGIAHGPVFRKLDRWGNLGDNALNSNSLVGL 240

Query: 239 LRQALERAGIPAEQYTSHSLRRGFATWAHRSGWDLKSLMSYVGWSDMKSAMRYVEATPFL 298
           LR+ LERAG+PA  YT HSLRRGFATWA  +GW+LKSLMSYVGW D KSA+RY+++    
Sbjct: 241 LRRMLERAGVPAALYTGHSLRRGFATWATANGWELKSLMSYVGWKDAKSALRYIDSAQRF 300

Query: 299 G 299
           G
Sbjct: 301 G 301