Pairwise Alignments

Query, 308 a.a., recombinase from Pseudomonas simiae WCS417

Subject, 323 a.a., putative cointegrate resolution protein S from Pseudomonas putida KT2440

 Score =  415 bits (1066), Expect = e-121
 Identities = 199/310 (64%), Positives = 249/310 (80%), Gaps = 3/310 (0%)

Query: 1   MSDLDRYLNAATRDNTRRSYRAAIEHFEVSWGGFLPATSASVARYLVAHAGVLAVNTLKL 60
           M D+ RYL A TR+NTRRSY++AIEHFEV+WGGFLPATS ++ RYLV +A  L+++TLK 
Sbjct: 1   MKDVGRYLQAGTRENTRRSYQSAIEHFEVTWGGFLPATSDNIVRYLVEYADTLSLSTLKQ 60

Query: 61  RLSALAQWHTSQGFPDPTKAPVVRKVLKGIRAVHPAQEKQAEPLQLKHLEQVVASLESEA 120
           RL+ALAQWH +QGFPDPTK P VR+VLKGIR +HPAQ KQA PLQL+HLEQ +  L  EA
Sbjct: 61  RLAALAQWHITQGFPDPTKTPTVRQVLKGIRTLHPAQTKQAAPLQLQHLEQAIQWLSREA 120

Query: 121 KAAAH--DLPRLLRAKRDTALILLGFWRGFRSDELCRLEIEHVHATPGAGISVYLPRSKS 178
           + A    +L  LLR++RD AL+L+GFWRGFRSDELCRL++EH+ A  GAG+S++LP+SK 
Sbjct: 121 EQAQQSGNLASLLRSRRDAALLLIGFWRGFRSDELCRLQVEHIQAEAGAGMSLFLPQSKG 180

Query: 179 DRDNLGKTYHTPALLRLCPVQAYNEWLSASALVRGPVFRGIDRWGNLGEEGLHPNSVIPL 238
           DRDNLG T++ PAL  LCPVQAY +W+SA+ + RG VF  +DRWG+L +E LHP S+I L
Sbjct: 181 DRDNLGTTHYVPALKCLCPVQAYLDWISAAGIARGAVFCRLDRWGHLSDEALHPGSLISL 240

Query: 239 LRQALERAGIPAEQYTSHSLRRGFATWAHRSGWDLKSLMSYVGWSDMKSAMRYVEATPFL 298
           LRQ L+RAGI AE YTSHSLRRGFA+WA  +GWDLK+LM+YVGW D+KSAMRY++     
Sbjct: 241 LRQILQRAGISAELYTSHSLRRGFASWATANGWDLKALMTYVGWKDIKSAMRYIDPAISF 300

Query: 299 GMTLATQPLL 308
           G  LA +P+L
Sbjct: 301 G-GLAAKPVL 309