Pairwise Alignments

Query, 307 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 296 a.a., Permease of the drug/metabolite transporter (DMT) superfamily from Variovorax sp. SCN45

 Score = 90.5 bits (223), Expect = 4e-23
 Identities = 83/303 (27%), Positives = 139/303 (45%), Gaps = 23/303 (7%)

Query: 8   ITYMKLAAVTMIWGGTFVAGRYLSGTVDPLLAASLRFALASLALLGFLGLARIPLARPSP 67
           + Y  LA    + GG     + L      LL A LRF +A+LA+  +L   R P   P  
Sbjct: 1   VAYGCLALSMSLVGGYVALSKPLVAAFPVLLLAWLRFGIAALAMPHWL--KRTPDEPPMT 58

Query: 68  RQLLQLGML-GFFGIFFYNLCFFYGLQSINASRASLIVALNPAVIGLASRWLF-KERLGA 125
                L  L  F G F +++C  +G+   +A  A +I+A  PA + +AS WLF +ER+  
Sbjct: 59  AHTRWLVFLESFLGNFLFSICMLFGVSLTSAVSAGVIMASIPACVAVAS-WLFLRERITV 117

Query: 126 SNVAGILLCLTGAAVVIVSRNP-HV-----LNEATSSWRGDLLIFGCVVGWGIYSLFSRG 179
               G+ +      + +++ +P H       + A+  W G+LL+F  V+    Y++  + 
Sbjct: 118 R--IGLAIACAALGIGLLALSPAHASATPSASPASMPWLGNLLVFCAVLCETAYAVIGKS 175

Query: 180 LNQSLGPLQTVT----WSILLGTLMLTLTTLIMGRFTLEAMGRLQTAQGLSLAYLGVLGS 235
           L   LGP +  +    W  +L ++   +   +   FT    G       L +AY  +  S
Sbjct: 176 LTGRLGPKRIASLINLWGFVL-SMPFGIWFALQFDFTAVRFG----TWALLVAY-ALAAS 229

Query: 236 ALAYIGYYDGIRRIGATRSGVFIALNPLTAVICGALLLDEPLSLPMLIGGAVILLGIYLC 295
                 +  G+R + A ++GVF  L P++A + G L+L E LS   L+   + L+G+ L 
Sbjct: 230 IWTVWLWMTGLRNVPAAQAGVFAVLLPVSAALVGVLVLGESLSTTQLLAFVIALVGVVLA 289

Query: 296 NKP 298
             P
Sbjct: 290 TWP 292



 Score = 25.0 bits (53), Expect = 0.002
 Identities = 21/72 (29%), Positives = 31/72 (43%)

Query: 233 LGSALAYIGYYDGIRRIGATRSGVFIALNPLTAVICGALLLDEPLSLPMLIGGAVILLGI 292
           LG+ L  I    G+    A  +GV +A  P    +   L L E +++ + +  A   LGI
Sbjct: 71  LGNFLFSICMLFGVSLTSAVSAGVIMASIPACVAVASWLFLRERITVRIGLAIACAALGI 130

Query: 293 YLCNKPLARARA 304
            L     A A A
Sbjct: 131 GLLALSPAHASA 142