Pairwise Alignments

Query, 304 a.a., integrase from Pseudomonas simiae WCS417

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

 Score = 89.0 bits (219), Expect = 1e-22
 Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 17/228 (7%)

Query: 64  EDGYAPNTSSLYVNAVRGVMNEAWRLNLISQEHLLRMRTVKAAPGTRLSQGRNLRRSLIR 123
           E  Y P +++ +++ VRG      R  LI+ +  L++   +         GR L +SL  
Sbjct: 65  EQNYKPRSTARFLSGVRGFYRYLLREKLIAVDPTLQVDMPQL--------GRPLPKSLSE 116

Query: 124 EMMEVCAADP---RPQGLRDAAVIGILYGSGMRKSESVNLDLAQINFEERSLRVIGKGNK 180
             +E   A P      G RD A++ +LY  G+R +E ++L L Q+N  +  LRV+GKG+K
Sbjct: 117 ADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSK 176

Query: 181 ELIKYAPDWAFAKLQAWLAFRREQLKEGEHDDSFLFNRIRRGSHITRERITKHAIYYIAR 240
           E +    + A   ++ ++   R +L  G   D  LF  + RG  +TR+    H I + A+
Sbjct: 177 ERLVPMGEEAIVWVERYMRDARSELLGGRPSD-VLFPSL-RGEQMTRQTFW-HRIKHQAK 233

Query: 241 QRGQQVGVKIMPHDFRRSFITRVIEE-HDLSIAQKLAHHTNIQTTASY 287
             G  +G  + PH  R +F T ++    DL + Q L  H+++ TT  Y
Sbjct: 234 VAG--IGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279