Pairwise Alignments

Query, 304 a.a., integrase from Pseudomonas simiae WCS417

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

 Score = 83.2 bits (204), Expect = 7e-21
 Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 23/231 (9%)

Query: 64  EDGYAPNTSSLYVNAVRGVMNEAWRLNLISQEHLLRMRTVKAAPGTRLSQ---GRNLRRS 120
           + GY P +++ +++ +RG              +LLR + V   P  ++     G+ L +S
Sbjct: 65  DQGYKPRSTARFLSGLRGFFR-----------YLLREKLVAIDPTLQVDMPQLGKPLPKS 113

Query: 121 LIREMMEVCAADP---RPQGLRDAAVIGILYGSGMRKSESVNLDLAQINFEERSLRVIGK 177
           L    +E     P      G RD A++ +LY  G+R +E V+L L Q+N  +  LRV+GK
Sbjct: 114 LSEADVEALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGK 173

Query: 178 GNKELIKYAPDWAFAKLQAWLAFRREQLKEGEHDDSFLFNRIRRGSHITRERITKHAIYY 237
           G+KE +    + A   L+ +    R +L  G   D    +  +RG  +TR+    H I +
Sbjct: 174 GSKERLVPMGEEAVVWLERYQRDGRAELLNGRPSDVLFPS--QRGEQMTRQTFW-HRIKH 230

Query: 238 IARQRGQQVGVKIMPHDFRRSFITRVIEE-HDLSIAQKLAHHTNIQTTASY 287
            AR  G  +   + PH  R +F T ++    DL + Q L  H+++ TT  Y
Sbjct: 231 HARVAG--IDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279