Pairwise Alignments

Query, 440 a.a., porin from Pseudomonas simiae WCS417

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  337 bits (864), Expect = 4e-97
 Identities = 183/400 (45%), Positives = 250/400 (62%), Gaps = 23/400 (5%)

Query: 43  LLRNYYMN---RNREG-GRADNIDWTQGAMLNYASGFTQGTIGFGVDAYAYGGLKLDATH 98
           L RNY+++   R+  G G+    +W QG +    SGFT+GT+G G+DA+ + GLKLD   
Sbjct: 33  LSRNYFLHSDFRSPSGSGQNYRQEWAQGFIGEVRSGFTEGTVGVGIDAHGFLGLKLDGGR 92

Query: 99  ADAGTGNLPTDRHGDPEDAYGSVGAAVKIKVSKTQLKFGDMQPTAPVFATGGTRLLPQTA 158
             +GTG LP D  G  E  Y S GAA+K+++  TQL++G+M    PVF TG  RL P+ A
Sbjct: 93  GHSGTGLLPRDSDGRAESEYSSAGAALKMQLGNTQLRYGEMMVETPVFDTGDKRLHPEYA 152

Query: 159 TGFDLTSSEIAGLDLEAGHFTSTNSGMTSNHDHDIYATYANIAANSASFLGGKYTFSPS- 217
           TG+ + +++     L+AG FT+ N+   S+  HD ++ Y     N A  L G  TF+P+ 
Sbjct: 153 TGWWVENTDQPDWRLQAGRFTAFNNQDNSS-THDDFSGYGATTHNRAISLAGA-TFAPNG 210

Query: 218 -LSATVYAGELEDIWRQYYTNLNYVIPLVHDQSLALDGNLYRTLDTGSAKAGAINNTTYS 276
              A +YAG+LE+ WRQ Y NLN         +  LDGNLY+T DTG+A AGAI+   YS
Sbjct: 211 PFGAALYAGQLENTWRQAYLNLNLA-----QGNWRLDGNLYKTRDTGNASAGAIDTLAYS 265

Query: 277 LAAAYSFLQAHTLTLSFQKVHGDTPFDYIGTGNNGAGEGGDSVYLANSVQWGDFNGPGEQ 336
           L A YSF  A  L++++QKV GDTPFD++G         GDS+YLAN++++ DFNGPGE 
Sbjct: 266 LLAKYSF-GAQALSVAYQKVEGDTPFDFVG---------GDSIYLANAIKYADFNGPGEH 315

Query: 337 SWGIRYDLNMASYGVPGLSFMGRYINGSDINGTHTPDHSAYAGDYGDDGAHHETDLEAKY 396
           SW +RYDLN A+ G PGLS MGRY++G  I+G+H P   AY   YGD G H E D++ KY
Sbjct: 316 SWQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGAYVNQYGDGGKHWERDIDLKY 375

Query: 397 VIQSGPAKNLSLRVRDAIVAANADQRDGDLNELRLIVDYP 436
           V+QSG AK+LSL        AN  Q   D++ + LI++YP
Sbjct: 376 VVQSGAAKDLSLSFSHVSHRANQAQAGDDIDRIYLIIEYP 415