Pairwise Alignments

Query, 440 a.a., porin from Pseudomonas simiae WCS417

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  327 bits (837), Expect = 6e-94
 Identities = 193/449 (42%), Positives = 263/449 (58%), Gaps = 48/449 (10%)

Query: 6   SLLALAVCAGISQMAFAESVTDQADSKGFIEGSSVTGLLRNYYMNR---NREGGRADNID 62
           S++ALAV AG SQ+A A +   Q +SKGFIE S ++   R  Y +R   N EGG++   +
Sbjct: 7   SMIALAVSAGTSQLAMASA---QDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREE 63

Query: 63  WTQGAMLNYASGFTQGTIGFGVDAYAYGGLKLDATHADAGTGNLPTDRHGDPEDAYGSVG 122
              G +  + SGFTQGT+G GVDA    GLKLD+    AGTG  PT   G  +D Y   G
Sbjct: 64  TGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGG 123

Query: 123 AAVKIKVSKTQLKFGDMQPTAPVFATGGTRLLPQTATGFDLTSSEIAGLDLEAGHFTSTN 182
            AVK ++S T LK GD     PVFAT  +RLLP+ A G  +TS+EI GL L AGHFTS  
Sbjct: 124 GAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLT 183

Query: 183 SGMTSNHDHDIYATYANIAANSASFLGGKYTFSPSLSATVYAGELEDIWRQYYTNLNYVI 242
           +   +N D        +     A+ +GG Y F+ +LS ++Y  ++ED WR+YY N+N+ +
Sbjct: 184 AQEQTNRD--------SFGLKEANVVGGTYAFTDNLSTSLYYSKVEDYWRKYYANVNWAL 235

Query: 243 PLVHDQSLALDGNLYRTLDTGSAKAGA-----INNTTYSLAAAYSFLQAHTLTLSFQKVH 297
           P+  +Q L  D N+Y T   GSA+  A     ++N  +SL+ AY+ + AHT TL++QKV 
Sbjct: 236 PISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYN-IGAHTFTLAYQKVT 294

Query: 298 GDTPFDYIGTGNNGAGEGGDSVYLANSVQWGDFNGPGEQSWGIRYDLNMASYGVPGLSFM 357
           GD  + Y         +GG +++LANSV   DFN   E+SW  RYDLN A YG+PGL+FM
Sbjct: 295 GDGDYGY-------GIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFM 347

Query: 358 GRYINGSDINGTHTPDHSAYAGDYGDDGAHHETDLEAKYVIQSGPAKNLSLRVRDAIVAA 417
            RY+ GSD N   T            +G   E D++ KYV+Q GPAK+LS RVR A   +
Sbjct: 348 TRYVRGSDANVAGT-----------SNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRS 396

Query: 418 NADQRDG------DLNELRLIVDYPFTLL 440
           +    DG       ++ELRLIV+YP ++L
Sbjct: 397 S----DGVYYDSPSIDELRLIVEYPLSIL 421