Pairwise Alignments

Query, 451 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 439 a.a., Methyl-accepting chemotaxis transducer/sensory box protein from Pseudomonas putida KT2440

 Score =  380 bits (977), Expect = e-110
 Identities = 201/414 (48%), Positives = 277/414 (66%), Gaps = 5/414 (1%)

Query: 24  IAALERSMAVVEFDLNGRVLRANDNFLKTLGYNASQLTGKSHRDFCPPALTSSPAYSQFW 83
           +AA+ RSMA++EF  +G +L AN+ F + +GY+A +L GK HR FC P    S  Y Q W
Sbjct: 27  LAAIGRSMAMIEFAPDGTILDANERFCQAMGYSADELRGKHHRLFCEPDYAKSAEYQQLW 86

Query: 84  SDLKAGKFVSGTFKRVDSNGNTIWLEASYNPVLDERGQVLKVVKYALDVTSKVEQEAATR 143
            +L  GK +SGTF+R+D  G  +WLEASY PVLDE  QV  V+K A D+T +V QE  + 
Sbjct: 87  RELGQGKAISGTFERIDKAGREVWLEASYMPVLDEHRQVTSVIKVASDITQRVVQEHESE 146

Query: 144 SKLTALDRAMAVIEFDLNGQVLDANVNFLNVMGYTLAEIKGKHHRLFCEPALINSHEYTD 203
           S L A+ R+MAVIEF   G+V+ AN NFL+ MGY L E+ G+HH LFC      S +Y +
Sbjct: 147 SLLKAISRSMAVIEFTPQGRVIKANQNFLDTMGYRLDEVVGRHHGLFCLAHERESAQYRE 206

Query: 204 FWRRLNSGEFFAGQFKRLGKQGRVVWLEASYNPVYDGDGKLTKIVKFASDITERVEKFEE 263
           FW  LN GE+ + +F+R+ KQG+ V+LEASYNP++D  G+L K+VKFASDIT +V     
Sbjct: 207 FWASLNRGEYHSHRFERVNKQGQTVFLEASYNPIFDSKGRLCKVVKFASDITHQV----C 262

Query: 264 DSRGASRAYHISS-ETERFAEHGTQVIQETASEMRRIADNIGASARLVGQLGDRSEQITA 322
             + A+ A H SS +T+  A  GT+V+Q+    + +I+  +  +AR +  +  +S+ I  
Sbjct: 263 TQQSAAHAAHASSVQTDACARKGTEVVQQAVQVIEQISQELNDAARSIDAVNRQSDVIGQ 322

Query: 323 IVNTIRGIADQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAGRTSRSTAEIAEMIGM 382
           IV TIRGIADQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA RTS++T EI +++  
Sbjct: 323 IVLTIRGIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRNLAARTSKATLEIVDVVRQ 382

Query: 383 ILSETRDAVTSMNATQEGAQRGVSLADQAGSVILQIRTSTSDAVEAVSMFASKL 436
               +  AV SM ++      GV+LA++AG+VI++I+  +   V+A+S   S L
Sbjct: 383 NHDLSLLAVASMQSSLNRTGHGVALANEAGTVIMEIQQGSRHVVDAISQITSTL 436



 Score =  133 bits (335), Expect = 1e-35
 Identities = 68/146 (46%), Positives = 90/146 (61%), Gaps = 1/146 (0%)

Query: 140 AATRSKLTALDRAMAVIEFDLNGQVLDANVNFLNVMGYTLAEIKGKHHRLFCEPALINSH 199
           A  ++KL A+ R+MA+IEF  +G +LDAN  F   MGY+  E++GKHHRLFCEP    S 
Sbjct: 21  ADAQAKLAAIGRSMAMIEFAPDGTILDANERFCQAMGYSADELRGKHHRLFCEPDYAKSA 80

Query: 200 EYTDFWRRLNSGEFFAGQFKRLGKQGRVVWLEASYNPVYDGDGKLTKIVKFASDITERVE 259
           EY   WR L  G+  +G F+R+ K GR VWLEASY PV D   ++T ++K ASDIT+RV 
Sbjct: 81  EYQQLWRELGQGKAISGTFERIDKAGREVWLEASYMPVLDEHRQVTSVIKVASDITQRVV 140

Query: 260 KFEEDSRGASRAYHISSETERFAEHG 285
           + E +S    +A   S     F   G
Sbjct: 141 Q-EHESESLLKAISRSMAVIEFTPQG 165



 Score =  122 bits (307), Expect = 2e-32
 Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 20/195 (10%)

Query: 10  LSARTAEVTEFKGLIAALERSMAVVEFDLNGRVLRANDNFLKTLGYNASQLTGKSHRDFC 69
           ++ R  +  E + L+ A+ RSMAV+EF   GRV++AN NFL T+GY   ++ G+ H  FC
Sbjct: 135 ITQRVVQEHESESLLKAISRSMAVIEFTPQGRVIKANQNFLDTMGYRLDEVVGRHHGLFC 194

Query: 70  PPALTSSPAYSQFWSDLKAGKFVSGTFKRVDSNGNTIWLEASYNPVLDERGQVLKVVKYA 129
                 S  Y +FW+ L  G++ S  F+RV+  G T++LEASYNP+ D +G++ KVVK+A
Sbjct: 195 LAHERESAQYREFWASLNRGEYHSHRFERVNKQGQTVFLEASYNPIFDSKGRLCKVVKFA 254

Query: 130 LDVT---------------SKVEQEAATRSKLTALDRAMAVIE---FDLN--GQVLDANV 169
            D+T               S V+ +A  R     + +A+ VIE    +LN   + +DA  
Sbjct: 255 SDITHQVCTQQSAAHAAHASSVQTDACARKGTEVVQQAVQVIEQISQELNDAARSIDAVN 314

Query: 170 NFLNVMGYTLAEIKG 184
              +V+G  +  I+G
Sbjct: 315 RQSDVIGQIVLTIRG 329