Pairwise Alignments

Query, 438 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 439 a.a., porin from Pseudomonas simiae WCS417

 Score =  238 bits (607), Expect = 3e-67
 Identities = 160/443 (36%), Positives = 221/443 (49%), Gaps = 57/443 (12%)

Query: 24  QDQSKGFIEDSHLNIAARNAYISRDYKNGKQDKA------EWGQGFIGKLESGFTQGTVG 77
           QD  +GFIE S +N+ ARN Y +RD + G+           W QG IG+ ESGFTQGTVG
Sbjct: 24  QDPPEGFIEGSTVNVLARNFYFNRDDRKGQSSPTGNGYSEAWAQGLIGRFESGFTQGTVG 83

Query: 78  VGVDVIGQYAIRLDGGKGRAGAGGIDFFKQGNGTTNPDGSNNPGSAPHDLAKGGAAVKFR 137
            G+D      ++LD G GR+G  G        G    D SN+P     + +K G A K R
Sbjct: 84  FGLDAFAMVGVKLDSGTGRSGGKG------SFGVLPVDSSNHPED---NYSKVGGAAKLR 134

Query: 138 VSNTVLKYGDQFPAVPVLQYDNSRLLSETYTGTSIVSKEIAGLQLDAGHFTKEARKSMEG 197
           V +TV+K GD FP  PV+ Y +SR+L E++ G +  +  + GL L  G  T  ++ +  G
Sbjct: 135 VLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGLSLQGGRLTGMSQPAQSG 194

Query: 198 TDSGRLKS---------IDYIGGSYKFTESLSAALYASDMQDVLKKQYVNVNYVLALPEK 248
            D G             I Y GG Y   ++LS +LY+S ++D   + Y        L ++
Sbjct: 195 MDKGFATFYAGPVDSPWIGYFGGDYTVNKNLSFSLYSSRLKDAWDQYYFGSAARYPLNDE 254

Query: 249 QSLTFDFNGYKTKLDRSFALENQKDADARDNKIWSLGATWAVGPHSFTVAHQRSTGDTGY 308
            SL  DFN YK         E +K   A DN IWS      VG HS  V+HQR+ GD  +
Sbjct: 255 VSLFGDFNYYKA------VDEGKKRLGAFDNNIWSARLGVKVGAHSLAVSHQRNNGDDDF 308

Query: 309 LYGGYRNAGGIGDGGNTILLANS-YWSDFNGKDERSWQLGYGIDFATFGVPGLTYNVAYV 367
            Y   R +       ++I L NS  +SDFN   ERSW + Y +D   FG+PGL++   Y 
Sbjct: 309 DY--LRQS-------DSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAFGIPGLSFMTRYG 359

Query: 368 RGTNIDDGT-----NRGDG-----TEREIWN---QFKYVVQSGPAKDLSLRARASWLRVS 414
           +G+  D         R DG     T++  W    +  YVVQ+G  KDLSLR R + +R S
Sbjct: 360 KGSGADYSNANAVYMRRDGAGNPLTDQRRWERDIEASYVVQAGRLKDLSLRLRQATVRSS 419

Query: 415 NNADQYNVGGNEIRLFADYPINV 437
                +     E+R+  +YPI V
Sbjct: 420 ----AFESDLEEVRVIVEYPIAV 438