Pairwise Alignments

Query, 438 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  244 bits (622), Expect = 5e-69
 Identities = 166/463 (35%), Positives = 238/463 (51%), Gaps = 60/463 (12%)

Query: 9   IALGILSASTAMANDQDQSKGFIEDSHLNIAARNAYISRDYKNG-----------KQDKA 57
           ++L IL AS A A+  D+  GFI+ + +++  RN + S+DY+NG           +    
Sbjct: 11  LSLAILLASPAFADSDDE--GFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQSLHR 68

Query: 58  EWGQGFIGKLESGFTQGTVGVGVDVIGQYAIRLDGGKGRAGAG-GIDFFKQGNGTTNPDG 116
           EWG G I  L+SGFT+GTVG GVDV G   ++LDGG G  G G G+       G  +  G
Sbjct: 69  EWGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVP------GIVSRSG 122

Query: 117 SNNPGSAPHDLAKGGAAVKFRVSNTVLKYGDQFPAVPVLQYDNSRLLSETYTGTSIVSKE 176
           SN  G       K G A+K R  +T L+YGD  P  PVL   + RLL +T  G    +  
Sbjct: 123 SNFDGEPKDSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNS 182

Query: 177 IAGLQLDAGHFTKEA-------RKSMEGTDSGRLK---SIDYIGGSYKFTESLSAALYAS 226
           + GL L  G     +       R  +    +GR+K    + Y+GG Y+F + L+  L++S
Sbjct: 183 LDGLSLQGGKLESSSDRNASNHRGDLGTVYAGRIKGANDVVYLGGDYRFNDQLTLRLHSS 242

Query: 227 DMQDVLKKQYVNVNYVLALPEKQSLTFDFNGYKTKLDRSFALENQKDADARDNKIWSLGA 286
            + DV  + + +V++V  L  + SL    N Y+T+ D   AL  Q D D+     WS+ A
Sbjct: 243 RLDDVWNQSFFSVDHVQPLGSELSLKTGLNYYRTR-DSGQALAGQIDNDS-----WSVHA 296

Query: 287 TWAVGPHSFTVAHQRSTGDTGYLYGGYRNAGGIGDGGNTILLANSYWSDFNGKDERSWQL 346
             A G H F +++ R  GDT + Y        + +  +  L A S  SDFN  +ER+W+ 
Sbjct: 297 GLAAGAHGFKLSYTRIDGDTPFDY--------VWNTYDLQLDAASQVSDFNNPNERAWEA 348

Query: 347 GYGIDFATFGVPGLTYNVAYVRGTNID-----------DGTNRGDGTEREIWNQFKYVVQ 395
            Y  DFA  GVPGL+    YVRGT+ID           +GT  G   ER +W   KYV+Q
Sbjct: 349 RYDYDFAPLGVPGLSLTARYVRGTDIDGTRAGGAYSYFNGTEDGRHWERNLW--LKYVLQ 406

Query: 396 SGPAKDLSLRARASWLRV-SNNADQYNVGGNEIRLFADYPINV 437
           SGPAKDLS     +  RV  ++  + NV  +E+RL   YP+++
Sbjct: 407 SGPAKDLSFNLMQATHRVGGDHVAESNV--DELRLIVQYPLDI 447