Pairwise Alignments

Query, 438 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  225 bits (573), Expect = 2e-63
 Identities = 153/443 (34%), Positives = 226/443 (51%), Gaps = 50/443 (11%)

Query: 23  DQDQSKGFIEDSHLNIAARNAYISRDYKN-GKQDKAEWGQGFIGKLESGFTQGTVGVGVD 81
           D+D++ GFIE S  N+  RNAY +RD  N G +D  EWGQG + + ESG+T G VG G+D
Sbjct: 25  DEDKADGFIEGSSFNLHFRNAYFNRDNHNAGVRDTREWGQGAVARFESGYTPGVVGFGLD 84

Query: 82  VIGQYAIRLDGGKGRAGAGGIDFFKQGNGTTNPDGSNNPGSAPHDLAKGGAAVKFRVSNT 141
                 ++LDGG G AG   +    + +G          G+APH  +  GAAVK +  +T
Sbjct: 85  AHAMLGLKLDGGGGHAGTSILPEHIKDDGEL--------GAAPHSFSTAGAAVKLKAFDT 136

Query: 142 VLKYGDQFPAVPVLQYDNSRLLSETYTGTSIVSKEIAGLQLDAGHFTKEARKSMEG---- 197
            LK GD F   PV+    +R+L +T+ G S+ +  I GL L+ G  +     +  G    
Sbjct: 137 ELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEGGQVSFTHPYNQSGHRRI 196

Query: 198 -------TDSGRLKSIDYIGGSYKFTESLSAALYASDMQDVLKKQYVNVNYVLALPEKQS 250
                   +  + K +++ G S+  TE ++A LYA++++D+  + Y + +Y   + +  S
Sbjct: 197 DTYYGSLDEHDKSKHLNWAGASWSGTEHITANLYAAELKDIWNQYYADFDYTYVVNDLVS 256

Query: 251 LTFDFNGYKTKLDRSFALENQKDADARDNKIWSLGATWAVGPHSFTVAHQRSTGDTGYLY 310
           L    + Y T+ D   AL  +      DN  +S+  T   G HS T A+QR  G+T + Y
Sbjct: 257 LNPGVHFYHTQ-DTGQALLGK-----IDNNTYSVHFTVNAGFHSVTAAYQRVNGNTPFDY 310

Query: 311 GGYRNAGGIGDGGNTILLANS-YWSDFNGKDERSWQLGYGIDFATFGVPGLTYNVAYVRG 369
                       G+++ L NS  +SDFN  +ERSW+L YG DFA  GVPGL+ +++Y RG
Sbjct: 311 INL---------GDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGVGVPGLSTSLSYSRG 361

Query: 370 ----TNIDDGTN-----RGDGTEREIWNQ---FKYVVQSGPAKDLSLRARASWLRVSNN- 416
               T     T      R DG     W +    KYV Q G  KDLS+  R +  R S   
Sbjct: 362 EADLTKATQDTTHYDYYREDGKNAMHWERDLDVKYVFQEGDLKDLSVLVRYATHRGSQGY 421

Query: 417 -ADQYNVGGNEIRLFADYPINVF 438
            +   N   +E+R+  DYP+NVF
Sbjct: 422 ASIDSNSDNDELRVIVDYPLNVF 444