Pairwise Alignments

Query, 438 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  220 bits (561), Expect = 6e-62
 Identities = 155/474 (32%), Positives = 229/474 (48%), Gaps = 68/474 (14%)

Query: 2   LKQRMSLIALGILSASTAM-ANDQDQSKGFIEDSHLNIAARNAYISRD--------YKNG 52
           +K  + L A+  LS S A+ A  +D+ +GFIE S L +  RN Y +RD        Y +G
Sbjct: 3   IKVPLYLAAVSALSGSYAISAQAEDKPEGFIEGSSLTVLNRNFYFNRDNRDSTAPTYNSG 62

Query: 53  KQD----KAEWGQGFIGKLESGFTQGTVGVGVDVIGQYAIRLDGGKGRAGAGGIDFFKQG 108
           K +       W    I K  SGFTQGTVG GVD      ++LD G GR G         G
Sbjct: 63  KGNTNGYSEAWAHAIISKFNSGFTQGTVGFGVDAFAMIGLKLDTGDGRNG---------G 113

Query: 109 NGTTNPDGSNNPGSAPHDLAKGGAAVKFRVSNTVLKYGDQFPAVPVLQYDNSRLLSETYT 168
             + +    +N G A  +  K G A K R+ +T++K GD FP+ PV+   +SRLL E++ 
Sbjct: 114 RSSFDVLPVDNKGEARDEYTKVGGAAKVRLFDTIVKVGDVFPSTPVVASGDSRLLPESFR 173

Query: 169 GTSIVSKEIAGLQLDAGHFTKEARKSMEGTD-------SGRLKS--IDYIGGSYKFTESL 219
           G ++ +  I GL L  G     ++      +        G + S  I Y GG Y   ++ 
Sbjct: 174 GVTVENTSIQGLTLQGGRLHAMSQPVSSNLNDNFVTFYGGPVNSPWIGYGGGDYSINDNW 233

Query: 220 SAALYASDMQDVLKKQYVNVNYVLALPEKQSLTFDFNGYKTKLDRSFALENQKDADARDN 279
           + ++YAS ++DV  + Y   + V  L +  +L   FN YK         E +K     DN
Sbjct: 234 TVSVYASQLKDVWNQYYAGTSVVYPLSDDLALIGGFNYYKA------VDEGKKRLGEFDN 287

Query: 280 KIWSLGATWAVGPHSFTVAHQRSTGDTGYLYGGYRNAGGIGDGGNTILLANS-YWSDFNG 338
            IWS       G H+  ++HQR+ GD  + Y   R +       ++I + NS  +SDFN 
Sbjct: 288 NIWSAKVGVRYGAHTLALSHQRNNGDDDFDY--LRQS-------DSIFVDNSIQYSDFNS 338

Query: 339 KDERSWQLGYGIDFATFGVPGLTYNVAYVRGT------------NIDDGTNRGDGTEREI 386
             ERSW L Y ++F ++G+PGLT+   Y RG+              DD  N  D  +R  
Sbjct: 339 PKERSWMLRYDLNFTSYGIPGLTFMTRYARGSGADYSNANQFYMRTDDNGNPLDNQKR-- 396

Query: 387 WN---QFKYVVQSGPAKDLSLRARASWLRVSNNADQYNVGGNEIRLFADYPINV 437
           W    + KYVVQ+GPAKDLS R R    + +  A  +    +E R+  +YP+++
Sbjct: 397 WERDVEVKYVVQTGPAKDLSFRLR----QATTRATAFESDLDETRVIIEYPLSI 446