Pairwise Alignments

Query, 234 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 234 a.a., Octopine transport system permease protein OccQ from Azospirillum sp. SherDot2

 Score =  176 bits (445), Expect = 5e-49
 Identities = 96/233 (41%), Positives = 144/233 (61%), Gaps = 5/233 (2%)

Query: 1   MFDLLSFDEQGWGNALLKGLWMTLQISAGSFAVGVLIGLVVACLKLSAPRPIALLMRGYT 60
           M +LLSF   GWG  LL G  MT+ ++  +FA G+L+G + A  KLS    + ++   YT
Sbjct: 1   MLELLSFGPNGWGGQLLMGTAMTVAVAVSAFAFGILVGSLGASAKLSHSLALNVVADVYT 60

Query: 61  TVFRAVPELLLILLLYYAGSMGLNALMLWMGF-AQMNISGPLVAILVLGLVQGAYASEIF 119
           T+ R +PELL+I LL++ GS    ++    G+  +++++   + +L +GL+ GAY++E+ 
Sbjct: 61  TIVRGIPELLVIYLLFFGGSGVATSIASAFGYDGRVDLNAFTIGVLAVGLISGAYSTEVI 120

Query: 120 RAAILAIPHGQIEAARAFGLSGFGLFRRVTLPIMAPFALAGMSNLWINLIKDSALISVVG 179
           R A+ ++P GQIEAARA G+S + + RRV +P    FAL G+ N+W   +KD+AL+SV  
Sbjct: 121 RGAVQSVPFGQIEAARACGMSRWLILRRVLVPQTLRFALPGLGNVWQLTLKDTALVSVTA 180

Query: 180 TNELLYTAKQAAGSTRQYLLFYLTAAALYYLVTLASNYLSGRLE----RRIRR 228
             EL+     AAG+TRQ  LFY TAA LY ++T  S  L  R E    R +RR
Sbjct: 181 LAELMRITHLAAGATRQPFLFYSTAAVLYLMLTTISTALFNRAEISANRGVRR 233