Pairwise Alignments

Query, 284 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

 Score =  143 bits (361), Expect = 3e-39
 Identities = 91/258 (35%), Positives = 138/258 (53%), Gaps = 15/258 (5%)

Query: 3   SKRMATWLGSAVLMLAAGFSWAAEKPIVFAVAAEPYPPFTVKGGNGQWSGFEVDLIHKLC 62
           +K MA  LG+  L+LA     A+ + + FA     YPPF     + +  GF+VD+ H LC
Sbjct: 2   NKSMAL-LGACALLLAGA---ASAETLRFATEGA-YPPFNYVDADNKLHGFDVDITHALC 56

Query: 63  EGMKAECQIKEVAWDGIIPSLLAKKIDVIFSSMSVTDEREKQIAFSRAYYDSLLGVAGPK 122
           E MK EC +    W+GIIP+L+A+K D I +SM  T+ER K+IAF+  YY + L VA  K
Sbjct: 57  EQMKVECTLVAQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAK 116

Query: 123 GSEVEISPAGLKGKLIGVQISTVSANYLKKYYENI-ADLKYYDTQESANADLIAGRIDYM 181
            S+++ +     G  +G Q S+  A Y +  Y    AD+K Y T + ANADL AGR+D +
Sbjct: 117 DSKIDSAQTDFVGYTVGAQSSSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLDGV 176

Query: 182 MADDTAIAMMVKTPEASG---LAHIASVPYDPIIGRGVGAGLRKEDTALKARLDKAIGEL 238
           +AD   +   +          L  +A    D  I       +RK+D AL+ RL+ A+ ++
Sbjct: 177 IADKFPLHEWMNKNGGDCCKILGDVADTKADAAI------AVRKDDEALRQRLNTALQQI 230

Query: 239 LVSKDYDDLSQHYFGLSV 256
           + +  Y  ++  YF   +
Sbjct: 231 VANGTYQKIASKYFAFDI 248