Pairwise Alignments

Query, 815 a.a., helicase UvrD from Pseudomonas simiae WCS417

Subject, 804 a.a., ATP-dependent DNA helicase PcrA from Xanthobacter sp. DMC5

 Score = 65.5 bits (158), Expect = 1e-14
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 17/118 (14%)

Query: 527 RPLSHLMIDEFQDVSPQIVSWIRASLREIRSRGPAIHIGRGAQRSSLLCVGDDWQSIYGW 586
           R   +L++DE+QD +     W+R              + +G++  ++ CVGDD QSIYGW
Sbjct: 238 RRFKYLLVDEYQDTNVAQYLWLRL-------------LAQGSK--NVCCVGDDDQSIYGW 282

Query: 587 RGSSPKYFMAFDKEFPSPSTTRVMLGENYRSHQHIIDAAEHIVRAAPAIPGKKAKASG 644
           RG+     + F+ +FP     R  L  NYRS  HI+ +A H++       GK   + G
Sbjct: 283 RGAEVDNILRFESDFPGAKVIR--LERNYRSTGHILASAAHLIAHNEGRLGKTLFSEG 338



 Score = 42.0 bits (97), Expect = 1e-07
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 16/88 (18%)

Query: 691 EHISSVVNVDSSLPPQARRLKQLTYHSAKGLQADAVFMLGDCQHVTSSPYKNQVYRMAGL 750
           EHIS V++VD+     A  ++ +T HSAKGL+ D VF+ G  + +   P++  +      
Sbjct: 553 EHISLVMDVDNGAGEDA--VQVMTLHSAKGLEFDTVFLPGWEEGL--FPHQRALDEQ--- 605

Query: 751 GNAGDSEPYDNAQKDEVLRLAYVGITRA 778
           G AG          +E  RLAYVGITRA
Sbjct: 606 GKAG---------LEEERRLAYVGITRA 624



 Score = 29.6 bits (65), Expect = 7e-04
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 14/105 (13%)

Query: 145 VIAGAGAGKSTSLVLRIL-LLTHYLGFELSSMTVVTFTRESRKDFINKLMEILNLWGQPL 203
           V+AGAG GK+  L  R+  +L     F  S + VVTFT ++ ++  ++   I  + G  +
Sbjct: 50  VLAGAGTGKTRVLTARVAHILASGRAFP-SQILVVTFTNKAAREMKDR---IHGMVGDQI 105

Query: 204 GVKEAQAVVRTFHSRILPMVRSLPGFERLQAFENLNSGFEDADSN 248
              E    + TFHS  + ++R      R      L SGF   D++
Sbjct: 106 ---EGMPWLGTFHSIGVRILR------RHHELVGLKSGFTILDTD 141