Pairwise Alignments

Query, 815 a.a., helicase UvrD from Pseudomonas simiae WCS417

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score = 64.3 bits (155), Expect = 2e-14
 Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 25/172 (14%)

Query: 527 RPLSHLMIDEFQDVSPQIVSWIRASLREIRSRGPAIHIGRGAQRSSLLCVGDDWQSIYGW 586
           R   H+++DEFQD +    +W+R              + RG    SL+ VGDD QSIYGW
Sbjct: 215 RRFRHVLVDEFQDTNAVQYAWLRL-------------LARGGD--SLMAVGDDDQSIYGW 259

Query: 587 RGSSPKYFMAFDKEFPSPSTTRVMLGENYRSHQHIIDAAEHIVRAAPAIPGKKA---KAS 643
           RG+  +    +  +FP     R  L +NYRS   I+ AA  ++       GK+       
Sbjct: 260 RGAKIENIHQYTADFPDAEMIR--LEQNYRSTGGILKAANALIANNSGRLGKELWTDMGE 317

Query: 644 GAPQALVPVKVLERDDAALGRQLSEHYQK----GDSILMLYRKSSDKSLIEE 691
           G P  L      E D+A    +  E   K     + I +LYR ++   ++EE
Sbjct: 318 GEPLTLY-AAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVLEE 368



 Score = 35.4 bits (80), Expect = 1e-05
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 145 VIAGAGAGKSTSLVLRILLLTHYLGFELSSMTVVTFTRESRKDFINKLMEILNLWGQPLG 204
           V+AGAG+GK+  LV RI  L         S+  VTFT ++  +   ++ ++       LG
Sbjct: 30  VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQL-------LG 82

Query: 205 VKEAQAVVRTFHSRILPMVRSLPGFERL-QAFENLNS 240
           +  A   V TFH     ++R+     RL Q F+ L+S
Sbjct: 83  INPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDS 119



 Score = 32.7 bits (73), Expect = 7e-05
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 16/70 (22%)

Query: 710 LKQLTYHSAKGLQADAVFMLGDCQHVTSSPYKNQVYRMAGLGNAGDSEPYDNAQKDEVLR 769
           ++ +T HSAKGL+   VF++G        P+K  +            EP    + +E  R
Sbjct: 557 IQLMTLHSAKGLEFPYVFLVG--MEEGLFPHKMSL-----------EEP---GRLEEERR 600

Query: 770 LAYVGITRAV 779
           LAYVGITRA+
Sbjct: 601 LAYVGITRAM 610