Pairwise Alignments

Query, 577 a.a., ABC transporter from Pseudomonas simiae WCS417

Subject, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

 Score =  232 bits (592), Expect = 3e-65
 Identities = 173/533 (32%), Positives = 274/533 (51%), Gaps = 30/533 (5%)

Query: 56  LWAALVVIALSVGWMASGVALWLTHVADHRLQ--SSLREAMVHKLGRVPLGWYTDTTSGA 113
           L A  ++I L   W   G  L    +A   L     LR A+ +KL  +P  ++ +  SG 
Sbjct: 79  LQAVPLLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNKLLVLPNRYFDNHNSGH 138

Query: 114 VRKVVQDDLEDLHHLVAHHAVELTA----AIVTPLAGLLWLATLNWRLALLAVLTLPIYA 169
           +   +  ++  +    A  A+++       +V   A LLW+   NW L L+ V  LP+ A
Sbjct: 139 LISRITFNVTMVTG-AATDAIKVVIREGLTVVFLFAYLLWM---NWHLTLVMVAILPVIA 194

Query: 170 VAYTLMMRGFGAKMQLLDKSMTRVSAAIVEFVHGIAVVKAFGQVGQAHRSYQQAVNQFSE 229
           V  ++  + F  + + +  +M  V+    E + G  VV++FG      + + QA    ++
Sbjct: 195 VMVSIASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQRFGQASQSNTD 254

Query: 230 QYAGWVR------PLLRLEAFSSMALSVPVILLVSLGVGSLLLAYGWITPLELFAETLVA 283
           +     +      P+L+L  +S+MA  + ++L +           G  T  +L A    A
Sbjct: 255 KQLRMTKTGSLYTPMLQLVIYSAMAALMFLVLFLR----------GDSTAGDLVAYITAA 304

Query: 284 VVIPQSLLVINQSLTAQRTALAAADRI-EALLDVEELPTPKACVQPQGSDIRFEQVQFGY 342
            ++P+ +  +++  +  +  LA A+ I E L +  E+ T     +     +    + F Y
Sbjct: 305 GLLPKPIRQLSEVSSTIQKGLAGAESIFEQLDEAPEVDTGTVEKERVEGRLEVRNLSFTY 364

Query: 343 DA-EHLILKGVDLHCPAGSVTALVGASGAGKSTLAKLVPRFHDVNAGRICVGGADVREID 401
              E  +L  +      G + ALVG SG+GKSTLA L+PRF+  + G+I + G ++    
Sbjct: 365 PGTEREVLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYR 424

Query: 402 PRQLYRHVGFVLQDAQLVHGTVADNLRLGR-PDASDAEVVAAARSAQIHARIQALPRGYQ 460
            R L RHV  V Q   L + TVA+N+  G    A  A++ AAA  A     +  LP+G+ 
Sbjct: 425 LRNLRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFD 484

Query: 461 SVIGDDAVF-SGGEAQRVSIARTLLADTPVLILDEATSHADPESEALIQDALSALARGRT 519
           + +G++ V  SGG+ QR++IAR LL + P+LILDEATS  D ESE  IQ AL  + +GRT
Sbjct: 485 TEVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRT 544

Query: 520 VLVIAHRLASISGVDQIVVLDQGRVLESGCHEQLLKANGAYARMWRAGAETPA 572
            LVIAHRL++I   DQI+V+DQGR++E G H +LL ANG YAR+   G + PA
Sbjct: 545 TLVIAHRLSTIEKADQILVMDQGRLVERGTHTELLAANGHYARLHAMGLDEPA 597