Pairwise Alignments

Query, 413 a.a., RND transporter MFP subunit from Pseudomonas simiae WCS417

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  167 bits (423), Expect = 5e-46
 Identities = 120/372 (32%), Positives = 174/372 (46%), Gaps = 10/372 (2%)

Query: 13  AVLAVVVMSACGKTPEQAAAMPAA-KVSVAKVLEQPVNEWDEFTGRLEAPETVQIRPRVS 71
           A+   + ++ C    EQ  A  A+  V +  +  + V    E  GR+E     ++R RV 
Sbjct: 12  ALAMAIALAGCEPAAEQDGAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEVRARVP 71

Query: 72  GQIDQVAFTEGALVKKGDLLFQIDPRPFQAEVRRLEAQLQQTRAAATRSDNEAQRGERLR 131
           G +    F EGA VK GD+LFQIDP PF+A + R EA L + +A    +    +R E L 
Sbjct: 72  GIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRYEPLV 131

Query: 132 QSNAISAELADSRTTAAQEARAAVAGIQAQLDLAKLNLSFTRVTSPISGRVSRAEITAGN 191
           +  A+S +  DS T   + A AAV   QA +  A+LNL +  VT+PISGR+ RA  T G 
Sbjct: 132 KIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALATEGA 191

Query: 192 LV-TADVTALTSVVSTDKVYAYFDADERVFLKYTELARQGRRGATTPVYMGLFNETGNPH 250
           LV   + T +  +   D +Y  F       L+  +  + G   A +         T    
Sbjct: 192 LVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGALSADSQRLTAQVEGTDFQR 251

Query: 251 QGQMNFVDNQVNPATGTIRGRAVFDNSKGEFTPGLYARLKLVGSGTYSAVLINDEAV--G 308
            G++ F D  V+  TG +  R  FDN+ G   PG+Y R++        A+L+   AV  G
Sbjct: 252 SGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILVPQRAVQRG 311

Query: 309 TDLGKKFVLVMEGDKPAYRSVELGPKIEGLRIVRSGLNKEDTIVVKGLQRVRPGSPVAPE 368
           +D G+  VLV        R+V  G        +  GL   D ++V     + PG PVAP 
Sbjct: 312 SD-GQARVLVATNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGLAPGMPVAP- 369

Query: 369 TIPMASKETLAA 380
               A K+T AA
Sbjct: 370 ----AQKQTAAA 377