Pairwise Alignments

Query, 341 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 362 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

 Score =  213 bits (541), Expect = 8e-60
 Identities = 124/337 (36%), Positives = 190/337 (56%), Gaps = 6/337 (1%)

Query: 1   MSEKDTISIHLVREALLQSC--APGAASAEVLHDAGIDPQWLAEPTARVSATTYARLWRL 58
           M E D+++++ +  A+L +    P    A++L   GI PQ L +P ARV A  +A+LW  
Sbjct: 1   MRESDSVAVYFLN-AMLHALRDTPAERDAQLLA-VGIAPQLLDQPLARVPAKAFAQLWLA 58

Query: 59  LARRTDDEFFGMDPRKLKSGSLAFLCRAAMAQPTLATSLETALGFLSLMLERMPAELVRQ 118
           L +R DDEFFG+D   +  GS A +CR  + +P L  +L   +G   L L  +   L  +
Sbjct: 59  LIQRLDDEFFGLDSHGMPLGSFALICRGLILEPNLEKALRQCMGGFGLFLRDLRGSLTVR 118

Query: 119 QSLAEIVLVEPEAEP-NRAFTYFTYWMIVHGVACWLAGRRIPILAIELRCAKPDFCADYQ 177
              A I +    A+P  R +   TY +++ G+ CWLAGRRI I   EL  ++P    D  
Sbjct: 119 GGRAVISVQSNIADPLTRVYAEETYLVLMIGMLCWLAGRRIAIDRTELAVSRPAQ-EDDL 177

Query: 178 VMFSDNLRFDRPRTRMIFSADCLDLPIKRTPEELKRFLAHAPANILVKYRDPDSLATRIK 237
           +++  +LR    RT + F +  L LP+ +    LK FL  AP  +++++R+ + L   + 
Sbjct: 178 LLWGPDLRLGSGRTEVEFDSAYLRLPVVQDRAALKTFLRSAPQGLVIRFRNQNGLVAEVY 237

Query: 238 HDLRQLPPHTWPETEGLAVSLCISASTLRRRLAEEGQTYQGLKDSVRKELAIVWLAEPQI 297
             LR L    WP    LA    ISAST RR+L  EG++YQ +KD VR+ +A   L E  +
Sbjct: 238 RHLRALRYGQWPTLAALAQQQGISASTFRRQLEREGRSYQQIKDEVRRAMAFERLREGAL 297

Query: 298 SFAEIAERLGFADTSSFYKAFRKWSGSNPGHYRSLIL 334
           S AEIAE+ GF + S+F++AF+KW+G +PG YR+ ++
Sbjct: 298 SIAEIAEQAGFQEPSAFHRAFKKWTGQSPGSYRARLV 334