Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 863 a.a., Multifunctional non-homologous end joining protein LigD from Xanthobacter sp. DMC5

 Score =  630 bits (1625), Expect = 0.0
 Identities = 361/852 (42%), Positives = 476/852 (55%), Gaps = 59/852 (6%)

Query: 5   LSEYNRKRDFGITAEPAGSAPAGKRKASAL---SFVIQKHDARNLHYDFRLELDGVLLSW 61
           L  Y  KRDF  T EP+G+A    +  +A    SFVIQKH AR LHYDFRLE+DGVL SW
Sbjct: 4   LQRYRAKRDFAATPEPSGAARRKAKGEAARPEGSFVIQKHAARRLHYDFRLEMDGVLKSW 63

Query: 62  AVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRKA 121
           AV +GPSL P  KRLAVHVEDHPL YG FEG+IP GQYG G VI+WDRG W P  +P K 
Sbjct: 64  AVTRGPSLVPGEKRLAVHVEDHPLDYGSFEGTIPKGQYGGGSVIIWDRGTWTPIGDPHKG 123

Query: 122 YAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPNS 181
           YA G ++FTL GEKL G W LVR   +G    E WLLIK +D  AR     DI+  +P S
Sbjct: 124 YAKGHMEFTLDGEKLHGRWHLVRMAPRGGEKNENWLLIKAEDAFARPDGAPDILAEEPLS 183

Query: 182 VLSDASV---------------------------------------------------GK 190
           V+S  +V                                                   G 
Sbjct: 184 VVSGRAVDALSPDDPAPKKRAAKSGATGAKKAAPKSPAAKFPTPPADDPPPDDTTGTTGT 243

Query: 191 PKTRAKARKTA-LPEQFTPQLATLVDRAPEGD-WQYEIKFDGYRMLARIQAGEVRLFTRN 248
           P T  +  K A LP    P LATL  +AP G  + +EIKFDGYR+ AR++ G+VRL TR 
Sbjct: 244 PLTLPRGAKAAPLPAFIPPALATLATKAPAGTRYLHEIKFDGYRIQARVENGKVRLLTRT 303

Query: 249 GHDWTECLPRQVKA-LQALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRSLDIVYYL 307
           G DWT+     + A L    ++ +  DGE+V  +G+G  DF ALQ     GRS   VYY+
Sbjct: 304 GLDWTDRFGTGILAELNRFPIRTALFDGEIVVESGNGATDFSALQADLSEGRSDRFVYYV 363

Query: 308 FDAPFLNGEDRRQAPVEERRAALKEALAGSRSTLLRYSEAFTAHHRDIFESACDLALEGV 367
           FD   L+G D    P+++R+  L E L G     +RYS  F      +   AC L+LEGV
Sbjct: 364 FDLLHLDGHDLTPLPLKDRKDLL-EKLVGQDGDKVRYSAHFEDDGALVLRHACRLSLEGV 422

Query: 368 IGKRLGSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGSRSGFGALLLAVNNDTGLVYAG 427
           + K   +PY S R+ DWIK KC   QEFV+ G+     SR+  G+L+L V  D  L Y G
Sbjct: 423 VSKLKTAPYHSGRTRDWIKSKCLERQEFVVGGFVPSTTSRTAIGSLVLGVFEDGKLRYVG 482

Query: 428 RVGTGFDQAALKAIYAQLTPLECETSPLAKPLSSAQARGVHWVKPTLVAQVQFAEWTRED 487
           RVGTGF Q     ++  L   + +  P +  L++ +ARGV +V+P  VA+V+F  WT + 
Sbjct: 483 RVGTGFTQRVAADLHKLLVSEKTDVCPFSGKLTAEEARGVSFVEPLHVAEVEFGAWTGDG 542

Query: 488 VVRQAAFVGLRTDKPVAQVVHEQPRTVHSKKPVKKTSRDVNITHPDRVIDKHSGTQKQQL 547
            +R AAF GLR DKP  ++V E      +  P     R V +THPDRV     G  K+ L
Sbjct: 543 HLRHAAFRGLREDKPATEIVRESSSEPKASDP-PAPKRRVRLTHPDRVYWPDVGLTKEGL 601

Query: 548 AQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNIKQLDQSLDPGHAR 607
           A +Y  + +++ PF+  RP++L+R PEGI+G++FFQKH  +    NI Q+        A 
Sbjct: 602 ADYYAQVWRFMAPFVTGRPLALVRCPEGIDGQRFFQKHPWKGLDKNILQVPDPKAKDEAP 661

Query: 608 LMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLDPDPALPWKAMLEAAQLTL 667
            + I ++  L   VQ  ++E H +GAT    E PD+  +DLDP   +PW  ++ AA+   
Sbjct: 662 YLAIRDLDGLTALVQGAALEIHPFGATLADWERPDILTMDLDPGDDVPWGDVISAAEEVR 721

Query: 668 SVLDELGLQAFVKTSGGKGLHLIVPLARRDNWETVKAFAKGIAQFMTEQLPERFTATSGP 727
             +++ GL AF+KTSGGKGLH+  PL  + +W  +KAF K +A+ M    P+RF AT   
Sbjct: 722 ERIEKKGLSAFLKTSGGKGLHICAPLTPKADWARLKAFTKAMAEEMASDSPDRFVATITK 781

Query: 728 KNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELEGLRGAQQWTVANVLQR 787
             R G+I +DYLRN RGA+ VA YS RARPG PVS+P++ +EL    G Q + V   L R
Sbjct: 782 SQRKGRILVDYLRNQRGATAVAPYSTRARPGAPVSMPLAWDELGEAIGPQHFNVGYALAR 841

Query: 788 LNALKADPWAGY 799
           L  L  DPW  +
Sbjct: 842 LMNLGHDPWGDF 853