Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 837 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Sphingobium sp. HT1-2

 Score =  578 bits (1489), Expect = e-169
 Identities = 331/845 (39%), Positives = 471/845 (55%), Gaps = 61/845 (7%)

Query: 2   SKPLSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLSW 61
           + PL+ YN KRDF  T+EPAG       K    SF++QKH A  LH+DFRLE+DGVL SW
Sbjct: 4   NNPLASYNAKRDFNRTSEPAGKIA----KKGGNSFIVQKHAATRLHWDFRLEVDGVLKSW 59

Query: 62  AVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQP-HDEPRK 120
           AV KGPSLDP  KRLAV  EDHPLSYG FEG+IP G+YG G V++WDRG W+P   +  K
Sbjct: 60  AVTKGPSLDPDDKRLAVRTEDHPLSYGSFEGNIPKGEYGGGTVMLWDRGWWEPIAGKSAK 119

Query: 121 AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPN 180
               G L F L GE++ G+W LVR + +    +E WLL K  D +AR   + D+V+    
Sbjct: 120 NIEDGHLHFILHGERMKGEWLLVRMKGRAGEKRENWLLRKIDDGEARR--NGDLVERALT 177

Query: 181 SVLSDAS-----------------------------------VGKPKTRAKARKTALPEQ 205
           SVL+D S                                   +GK K RAKAR  A+P  
Sbjct: 178 SVLTDRSMAQIAGDIAGTQSLKGANGKTFADRMQAANAHNARIGKTKGRAKARTEAMPRF 237

Query: 206 FTPQLATLVDRAPEG-DWQYEIKFDGYRMLARIQAGEVRLFTRNGHDWTECLPRQVKALQ 264
             PQLATLVD  P G +W +EIK+DGYR L  +    ++++TR+G DWT+       A++
Sbjct: 238 IKPQLATLVDNVPVGNEWMHEIKYDGYRALVAVSGEAIKIYTRSGLDWTDKFSPLAGAIK 297

Query: 265 ALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRSLDIV-----YYLFDAPFLNGEDRR 319
           AL L  + +DGE+++ + DG P F ALQ     G   +       ++ FD   L+G D +
Sbjct: 298 ALDLPPALIDGEIIAFDADGNPSFSALQAVLKRGHGAERADTPFHFFAFDLLSLDGMDLK 357

Query: 320 QAPVEERRAALKEALAGSRSTLLRYSEAFTAHHRDIFESACDLALEGVIGKRLGSPYVSR 379
             P  ER+  L EAL       +  ++        ++ S C    EG+I KR+ +PY S 
Sbjct: 358 SLPAIERKERL-EALLADAEQPIHVADHLIGSGEKLYRSLCQAGQEGIIAKRVDAPYRSG 416

Query: 380 RSADWIKLKCRLSQEFVIVGYTRPQGSRSGFGALLLAVNNDTGLVYAGRVGTGFDQAALK 439
           R+  W+K+KC   QEFVIVG+TR +     F +LLL  +  + LVY G+VGTGFD A + 
Sbjct: 417 RTRAWVKVKCTRRQEFVIVGWTRSKAKGRAFSSLLLGQHEGSELVYKGKVGTGFDAATMT 476

Query: 440 AIYAQLTPLECETSPLAKPLSSAQARGVHWVKPTLVAQVQFAEWTREDVVRQAAFVGLRT 499
            +   + P+   T  +   +S+ +AR V WV+P LVA+V FAE+T E  VR  +F+GLR+
Sbjct: 477 DLAEAMGPISTGTPQVI--ISAREARDVQWVEPRLVAEVSFAEFTGEGRVRHGSFLGLRS 534

Query: 500 DKPVAQVVHEQPRTVHSKKPVKKTSRDVNITHPDRVIDKHSGTQKQQLAQFYDTISQWIL 559
           DK    V  E+        P   ++  + I++  RVI   SG  K  LA +Y  I+  +L
Sbjct: 535 DKLAKTVKPEKAA------PTPPSATVIKISNRARVIFPESGQTKGVLADYYARIAPLML 588

Query: 560 PFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNIKQLD-QSLDPGHARLMEIDNVGALI 618
            F  +RP+SL+R P+G   + FFQKH       +++ +  +  + G    + +D+   LI
Sbjct: 589 SFAANRPISLVRCPQGRAKKCFFQKHDSGAFGDHVRHVAIREKNGGSEDYLYVDDTDGLI 648

Query: 619 GAVQMGSVEFHTWGATSDKIETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAF 678
             VQMG++EFH W + +D +E PD  + DLDPD  + +  + +AA+     L E+GL +F
Sbjct: 649 ACVQMGTIEFHGWASRADAVEKPDRMIFDLDPDEGMDFAQVSQAAKDIRDHLREIGLISF 708

Query: 679 VKTSGGKGLHLIVPLARRDNWETVKAFAKGIAQFMTEQLPERFTATSGPKNRVGKIFIDY 738
              SGGKG+H++VPL+   +W+  K FA   AQ ++   P+RF AT     R  +IFID+
Sbjct: 709 AMLSGGKGVHVVVPLSPTHDWDAHKDFAARFAQALSAAEPDRFVATMSKAKRKDRIFIDW 768

Query: 739 LRNARGASTVAAYSVRARPGLPVSVPVSREELEGLRGAQQWTVANV---LQRLNALKADP 795
           LRN RG++ +  YS RAR G PV++PV   EL  L+ A  + + +V    +R + LK   
Sbjct: 769 LRNQRGSTAILPYSARARAGAPVAIPVDWNELNDLQDAHPFDIGDVEMLWERASKLKGWG 828

Query: 796 WAGYA 800
           +A  A
Sbjct: 829 FAAQA 833