Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 833 a.a., DNA ligase D from Pseudomonas putida KT2440

 Score =  902 bits (2330), Expect = 0.0
 Identities = 465/837 (55%), Positives = 593/837 (70%), Gaps = 29/837 (3%)

Query: 1   MSKPLSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLS 60
           M+KPL EY RKRDF  T EP+G    GKR A AL F IQKHDA +LHYDFRLELDG L S
Sbjct: 1   MAKPLQEYARKRDFNATPEPSGKRKRGKR-AHALQFCIQKHDASHLHYDFRLELDGTLKS 59

Query: 61  WAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRK 120
           WA+PKGPSLDP  +RLAVHVEDHPL Y  FEG IP G YGAGDVIVWDRGIW+P  +  +
Sbjct: 60  WAIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHE 119

Query: 121 AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPN 180
           AYA GKL+F L+GEKL G W L RT L  +G KEQW+L+K  D QA S  +Y IV+A P+
Sbjct: 120 AYAKGKLRFRLLGEKLGGVWNLFRTHL--AGKKEQWMLVKSHDAQACSETEYSIVEALPD 177

Query: 181 SVLSDASVGKPKTRAK-------ARKTA-------LPEQFTPQLATLVDRAPEGDWQYEI 226
           SVLS+ ++   K+ AK       +RK A       LP Q  PQLATLVD  P GDW+YE+
Sbjct: 178 SVLSERTLVPCKSAAKKATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPSGDWRYEV 237

Query: 227 KFDGYRMLARIQAGEVRLFTRNGHDWTECLPRQVKALQALKLKDSWLDGEVVSLNGDGLP 286
           KFDGYR+LARI+  ++RLFTRNGHDW+  +PRQV AL+AL +  +WLDGE+V  + +G+ 
Sbjct: 238 KFDGYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGMA 297

Query: 287 DFQALQNAFDIGRSLDIVYYLFDAPFLNGEDRRQAPVEERRAALKEALAGSRSTLLRYSE 346
           DFQALQNAFD      I YYLFD PFL G+D RQ P++ RR  L++ L  +   +++YS 
Sbjct: 298 DFQALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQNRRNTLRQLLEHNHCDVIKYSA 357

Query: 347 AFTAHHRDIFESACDLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGS 406
            F    + + +SAC L LEG+IGKR+ S Y  RRS DWIKLKC+  QEFVIVGYT P+GS
Sbjct: 358 DFDEPVQSLLDSACRLKLEGLIGKRVDSVYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGS 417

Query: 407 RSGFGALLLAV-NNDTG-LVYAGRVGTGFDQAALKAIYAQLTPLECETSPLAKPLSSAQA 464
           RSGFGALLLA+ +ND+G L YAG+VGTGF+   L +I+A+L PLE     L  P + A+A
Sbjct: 418 RSGFGALLLALHDNDSGQLRYAGKVGTGFNATTLASIHARLKPLEIARPALPSPPAGAEA 477

Query: 465 RGVHWVKPTLVAQVQFAEWTREDVVRQAAFVGLRTDKPVAQVVHEQ---PRTVHSKKPVK 521
           RGVHW++P L+A+V FA+ TR+ +VR + F GLR DK    +  E+    +TV ++    
Sbjct: 478 RGVHWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTVSNRNKQA 537

Query: 522 KTSR---DVNITHPDRVIDKHSGTQKQQLAQFYDTISQWILPFLRHRPVSLLRAPEGIEG 578
           K S    ++ +THPDRVID  +G  K+++A++Y  ISQWILP L+HRPV+L+RAP+G+ G
Sbjct: 538 KASENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGG 597

Query: 579 EQFFQKHSERLAIPNIKQLDQSLDPGHARLMEIDNVGALIGAVQMGSVEFHTWGATSDKI 638
           E FFQK++ +L IPN+   +++ + G A  M I+    L+GAVQM  +E HTW AT    
Sbjct: 598 ELFFQKNAGQLYIPNVLSYEKA-EAGQA-AMVINRADTLLGAVQMNMLELHTWNATDKDF 655

Query: 639 ETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDN 698
           + PD FVLDLDPDPALPWKAM+EA QLTL++LDELGL+ F+KTSGGKG+H++VPL RR  
Sbjct: 656 DKPDRFVLDLDPDPALPWKAMVEATQLTLTLLDELGLKVFLKTSGGKGIHVVVPLTRRAG 715

Query: 699 WETVKAFAKGIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPG 758
           W+ VK F+  I  ++ +  PER +A SGPKNRVG+IFIDYLRN +GA+T  AYS+RAR G
Sbjct: 716 WDEVKDFSHAIVNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRARDG 775

Query: 759 LPVSVPVSREELEGLRGAQQWTVANVLQRLNALKADPWAGYAN-RQKISKKMWDKLG 814
           LPVSVP+ REEL  ++ A QW + N+ + L A   DPWA     RQ I+ +M  +LG
Sbjct: 776 LPVSVPIWREELAQIKAANQWNITNLHEHL-AEVDDPWADMGKVRQSITARMRKQLG 831