Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 884 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

 Score =  561 bits (1446), Expect = e-164
 Identities = 350/879 (39%), Positives = 469/879 (53%), Gaps = 90/879 (10%)

Query: 2   SKPLSEYNRKRDFGITAEPAGSAPAGKRKAS-ALSFVIQKHDARNLHYDFRLELDGVLLS 60
           S  LS Y +KRDF  T EP+G+A   K KAS    FVIQKHDA  LHYD RLELDGV  S
Sbjct: 3   SDKLSTYKQKRDFQKTQEPSGAA---KLKASNRRRFVIQKHDATRLHYDLRLELDGVFKS 59

Query: 61  WAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDE--P 118
           WAV KGPSLDP  KRLAV VEDHPL YG FEG+IP GQYG G V++WDRG W+P     P
Sbjct: 60  WAVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKTP 119

Query: 119 RKAYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKE-QWLLIKEKDPQARSADDYDIVQA 177
            +A A G  KFTL GE+L G + LVR R    G K   WLLIK +D  +       ++  
Sbjct: 120 EQALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDFSVEEKGAAVLDE 179

Query: 178 QPNSVLSDASVG--------KPK-----------------------------TRAKAR-- 198
              SV S  ++         KPK                             T+AK +  
Sbjct: 180 NDTSVASGRTMEAIAAGKGRKPKPFMVQSGDVQADAVWDSNHGLAAEERASDTKAKRKPA 239

Query: 199 -----KTALPEQFTPQLATLVDRAPEGD-WQYEIKFDGYRMLARIQAGEVRLFTRNGHDW 252
                K+ +PE   PQL   +DR P    W +EIKFDGYR+  RI+ GEV L TR G DW
Sbjct: 240 LKKPAKSTMPEFIPPQLCETLDRPPSAKGWIHEIKFDGYRIQTRIENGEVTLKTRKGLDW 299

Query: 253 TECLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRSLDIVYYLFDAPF 312
           T   P    A  A  L D+ +DGE+ +L+ +G PDF ALQ A   G++ ++VY+ FD  F
Sbjct: 300 TAKYP--AIATSAANLPDAIIDGEICALDENGAPDFAALQAALSEGKTDELVYFAFDLLF 357

Query: 313 LNGEDRRQAPVEERRAALKEALAGS-RSTLLRYSEAFTAHHRDIFESACDLALEGVIGKR 371
              ED RQ P+ ER+  L+  L  +     LR+ E F      + +SAC L+LEG++ K+
Sbjct: 358 EENEDLRQLPLTERKERLQTLLDDAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQ 417

Query: 372 LGSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGSRSGFGALLLAVNNDTGLVYAGRVGT 431
             +PY S R+  W K KCR   E VI  Y +  G    F +LL+ V      VY GRVGT
Sbjct: 418 ADAPYQSGRTETWAKSKCRAGHEVVIGAYAKTNGK---FRSLLVGVFKGDHFVYVGRVGT 474

Query: 432 GFDQAALKAIYAQLTPLECETSPLAKPLSSAQARGVHWVKPTLVAQVQFAEWTREDVVRQ 491
           G+    +  I  +L  LE   SP     +  +   V WVKP LVA++QFA WT + +VRQ
Sbjct: 475 GYGAKTVDTILPRLRELETSKSPFTGIGAPKKDPNVVWVKPELVAEIQFAGWTADGLVRQ 534

Query: 492 AAFVGLRTDKPVAQVVHEQPR--------TVHSKKP--------VKKTSRDVNITHPDRV 535
           AAF GLR DKP  +V  E+P         T    KP         K     V I+ PD+ 
Sbjct: 535 AAFKGLREDKPAHEVEAEKPASPAKTDTPTPAKSKPSRPARGKNAKAEVMGVMISSPDKA 594

Query: 536 I--DKHSG--TQKQQLAQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAI 591
           +  D + G    K+ LA++++ +  W++  ++ RP S++R P+GI GE FFQ+H    A+
Sbjct: 595 LWPDANDGEPVTKEDLARYHEAVGPWLIDHIKGRPCSIIRTPDGIGGEVFFQRH----AM 650

Query: 592 PNIKQLDQ--SLDPGHARLMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLD 649
           P    L +   +       ++ID V  L    Q+G VE H W     + E P   V DLD
Sbjct: 651 PGTSNLIELVKVFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPGQPEVPGRLVFDLD 710

Query: 650 PDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLA----RRDNWETVKAF 705
           P P +P+  ++EAA+     L+ELGL +F KT+GGKGLH++ PLA    ++ +W   K F
Sbjct: 711 PGPDVPFSTVVEAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWPEAKGF 770

Query: 706 AKGIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPV 765
           A  +   M  + PE +        R G+IF+DYLRN R A+ VA  S RAR G PVS+P+
Sbjct: 771 AHDVCMQMARETPELYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARAGAPVSMPL 830

Query: 766 SREELEGLRGAQQWTVANVLQRLNALKADPWAGYANRQK 804
           S ++++     +++T+  V   L+  K   W  Y + Q+
Sbjct: 831 SWKQVKTDLDPKRFTIRTVPALLS--KTTAWQDYCDGQR 867