Pairwise Alignments

Query, 544 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 541 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  233 bits (594), Expect = 1e-65
 Identities = 141/355 (39%), Positives = 210/355 (59%), Gaps = 12/355 (3%)

Query: 199 AIALVMALLVS----------LIARSIVRPLQAAVNAMGNIASGESDLTRSLDTHGQDEV 248
           A ALV+ LLV+          L+ RSIV+P++ A+     +A G  DLT  +   G DE 
Sbjct: 188 AFALVIGLLVAATVLTFACAFLLTRSIVKPIEEALKCAEQVADG--DLTHVIRAEGTDEA 245

Query: 249 TQLSRHFNSFTAKLRQVVGQLQVCANALGQSSQELGSNATQAHDRSQQQSQQMELVATAI 308
            +L R       KLR  + Q+   A  L  +++EL +   ++    QQQ+ ++E  ATA+
Sbjct: 246 ARLLRAMARMQDKLRDTLQQIAGSATQLASAAEELNAVTDESARGLQQQNNEIEQAATAV 305

Query: 309 NEVTYGVQDVAKNAEHAASEMRDAQAQAQQGQVNIDSSLQQIDQLSGTISQAVEVIRTLS 368
            E+T  V++VA+NA   +    +A      G+  +  ++  I+++SG +    ++I  L+
Sbjct: 306 TEMTSAVEEVARNAVSTSEASSEASRSTGDGRDLVMETVGAIERMSGDVQATAKLITHLA 365

Query: 369 AESTQIGSVLEVIRSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQRTQKSTA 428
            +S  IG VL+VIR +ADQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ+ST+
Sbjct: 366 EQSRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTS 425

Query: 429 EIQGMIERLQGHSEAAVKVISDSHSASQMTIEQAGQAGASLTAIGESLRNLNGLNASIAS 488
           EI+ MI  +QG +E AV+ +  S   ++ T+  A  AG +L  I  ++  +N  N  IAS
Sbjct: 426 EIERMIGSIQGGTEEAVESMRTSTERAESTLNIARGAGMALDTIAGAVAQINERNLVIAS 485

Query: 489 ATLQQAHVVEDINQNVTEAAGLSHSTALAAEQSSVASAHLRGLSEQLDGLLRQFK 543
           A  +QA V  ++++N+     LS  +A  A Q+S ASA L  L+  L+GL+ +F+
Sbjct: 486 AAEEQAQVAREVDRNLVNINDLSVQSATGAHQTSAASAELSRLAVDLNGLVARFR 540



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 3  SLRNMSISRRLWLILIVAVLMLLALGMLMLKQI 35
          SLRNM+I+ R  L   +  L++L LG+  L Q+
Sbjct: 2  SLRNMNIAPRALLGFALIGLLMLGLGIFSLVQM 34