Pairwise Alignments

Query, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  324 bits (830), Expect = 4e-93
 Identities = 188/456 (41%), Positives = 272/456 (59%), Gaps = 12/456 (2%)

Query: 8   QVVLIDDDPHLRQALCQTLDLAGLNVLTLGEATGLTARLSRDWPGVVVSDIRMPGMDGLE 67
           +++++DD+ ++R+ L     L G                +   P VV+ DIRMP MDG++
Sbjct: 6   RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65

Query: 68  LLAELHGQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALRRL 127
            L E+   +   PV+L+T + +V  AV+A+R GA+D++ KPF  D L   V+RAL L+ +
Sbjct: 66  ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSM 125

Query: 128 VLDNRSLRLALSDRQQLSTRLVGHSPQMLRLREQIGALAATRADVLILGETGAGKEVVAR 187
             + R L  ALS   Q    ++ +SP M+ + +    +A ++A VLI GE+G GKE++AR
Sbjct: 126 KKEIRHLHQALSTSWQWG-HILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIAR 184

Query: 188 ALHDLSSRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLD 247
           A+H  S R  GPF+ +N  AL ES++ESELFGHE GAFTGAQ  R G FE AN GTL LD
Sbjct: 185 AIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD 244

Query: 248 EIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRFRADLYY 307
           EI  M L +Q KLLR+LQER  ER+GG+Q I +DIRIIAAT  DL+    +G FR DL+Y
Sbjct: 245 EIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY 304

Query: 308 RLNVAPLRIPPLRERGEDALMLFQHFADEASSRHGLPLHELQPGQRALLLRHSWPGNVRE 367
           RLNV  L +PPLR+R ED  +L  HF  + SS +   + ++ P   +LL   SWPGN+RE
Sbjct: 305 RLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRE 364

Query: 368 LQNAAERFALGLELALDNTPDNP--------SAGTLTSTPGG---LSEQVEQFEKSLIAA 416
           L N  ER  +     +  + D P        +AG + + P G   L E++++ EK +I  
Sbjct: 365 LSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIME 424

Query: 417 ELTRPHSSMRSLAEALGVPRKTLHDKLRKHGLNFAN 452
            L +   +    A  LG+ R+ L  KL+++G++ A+
Sbjct: 425 VLEQQEGNRTRTALMLGISRRALMYKLQEYGIDPAD 460