Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  141 bits (356), Expect = 5e-39
 Identities = 76/156 (48%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 15  LSSLYRDHRSWLESWLRRRLGNAWDAADLSQDTFLRVLASAQPIAQMQEPRAYLVTVGKR 74
           L  LYRDH  WL+ WLRRRLG+   AAD++QDTFLR+L S +     +E R+YL  + + 
Sbjct: 11  LHLLYRDHHGWLQGWLRRRLGDREHAADVAQDTFLRLLVSGR-FPGDKESRSYLAQIARN 69

Query: 75  LLVNFHQRRSLEQAYLNALASLPEACVPSPEQRWLLLETLQALDELLDGLPVLVRRAFLW 134
           L+++  +R  +E+AYL ++A LPE   PS E R L+LETL  +D +LD +P  VR+AFL 
Sbjct: 70  LVIDQWRRLRIERAYLESIAHLPEPESPSLETRALILETLMQIDAMLDRMPDNVRQAFLL 129

Query: 135 SQLEGLGYRDIAERLDVSERTVKRYMAQAYEHCLLV 170
           SQ EGL Y  IAERL V+  +V++YM +A   C  V
Sbjct: 130 SQFEGLSYAQIAERLGVTVSSVQKYMTRAIVACYQV 165