Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 169 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

 Score =  148 bits (373), Expect = 5e-41
 Identities = 78/163 (47%), Positives = 109/163 (66%), Gaps = 2/163 (1%)

Query: 6   VPTHAPELTL-SSLYRDHRSWLESWLRRRLGNAWDAADLSQDTFLRVLASAQPIAQMQEP 64
           +PT    + L ++LY DH  WL   LRR+LGN  +AADL+QDTF+R+L+S +    ++EP
Sbjct: 1   MPTSEASVRLVNTLYSDHHPWLLDMLRRKLGNLDNAADLAQDTFVRILSSNEA-GPLREP 59

Query: 65  RAYLVTVGKRLLVNFHQRRSLEQAYLNALASLPEACVPSPEQRWLLLETLQALDELLDGL 124
           RAYL TV  R+   + +R +LE+ YL A+A LPEA  PSPE R L++E L A+  +LDGL
Sbjct: 60  RAYLTTVASRIAAQYFRRLALERTYLEAIAHLPEASAPSPETRLLVVEALAAVSRVLDGL 119

Query: 125 PVLVRRAFLWSQLEGLGYRDIAERLDVSERTVKRYMAQAYEHC 167
              VR  FL +QL+GL Y  IA++L V+   V++ M +AY HC
Sbjct: 120 KPHVREIFLMAQLDGLTYSQIAQQLGVTINVVQKAMLKAYRHC 162