Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 71.2 bits (173), Expect = 8e-18
 Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 2/143 (1%)

Query: 26  LESWLRRRLGNAWDAADLSQDTFLRVLASAQPIAQMQEPRAYLVTVGKRLLVNFHQRRSL 85
           L S+L  RLG+   A D++ D +LRVL       Q++ PRA+L      L+V+ H+R+ +
Sbjct: 8   LVSFLSARLGSRQAAEDVAHDAYLRVLERTGS-EQIEHPRAFLYRTALNLVVDRHRRQLV 66

Query: 86  EQAY-LNALASLPEACVPSPEQRWLLLETLQALDELLDGLPVLVRRAFLWSQLEGLGYRD 144
            QA  L+AL +         +    L + L  + + LD L    R +FL  ++EGL ++ 
Sbjct: 67  RQAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIEGLSHQQ 126

Query: 145 IAERLDVSERTVKRYMAQAYEHC 167
           IAERL +S   V++++  A +HC
Sbjct: 127 IAERLGISRSLVEKHIVNAMKHC 149