Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score =  151 bits (382), Expect = 5e-42
 Identities = 81/168 (48%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 6   VPTHAPELTLS--SLYRDHRSWLESWLRRRLGNAWDAADLSQDTFLRVLASAQPIAQMQE 63
           +P   P L L   +LY +H  WL+ WL R+LGNA DAADL+ DTF+R+L+         E
Sbjct: 1   MPPAEPSLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNE 60

Query: 64  PRAYLVTVGKRLLVNFHQRRSLEQAYLNALASLPEACVPSPEQRWLLLETLQALDELLDG 123
           PRA L  + K L+V+  +R+ +E+AYL A+A LP+  VPSPE RWL+LETL  +D +L  
Sbjct: 61  PRALLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRD 120

Query: 124 LPVLVRRAFLWSQLEGLGYRDIAERLDVSERTVKRYMAQAYEHCLLVD 171
           +P  VR+ FL SQL+GL Y  IAE+L VS  T+KR M  A+  CL ++
Sbjct: 121 MPARVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACLSIE 168