Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 79.3 bits (194), Expect = 7e-20
 Identities = 49/160 (30%), Positives = 89/160 (55%), Gaps = 2/160 (1%)

Query: 10  APELTLSSLYRDHRSWLESWLRRRLGNAWDAADLSQDTFLRVLASAQPIAQMQEPRAYLV 69
           +P   L + +++H   L  +L RR+ +   AAD++Q+T+L+++   +    +   R+++ 
Sbjct: 4   SPMSGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIF 63

Query: 70  TVGKRLLVNFHQRRS-LEQAYLNALASLPEAC-VPSPEQRWLLLETLQALDELLDGLPVL 127
            V   L ++  +R   +  ++ ++  +   AC  P+PE   L  E LQ LD+ L  LP  
Sbjct: 64  RVAGNLAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDN 123

Query: 128 VRRAFLWSQLEGLGYRDIAERLDVSERTVKRYMAQAYEHC 167
            R+A L +++EGL  + +A+RL VSE  V +Y+ QA  HC
Sbjct: 124 ARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHC 163