Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  137 bits (346), Expect = 7e-38
 Identities = 74/167 (44%), Positives = 113/167 (67%), Gaps = 6/167 (3%)

Query: 1   MNDVVVPTHAPELTLSSLYRDHRSWLESWLRRRLGNAWDAADLSQDTFLRVLASAQPIAQ 60
           +ND + PT      ++ LY+ H +WL  WLR R+G +  AADL+QDTF+R+L + Q ++ 
Sbjct: 3   INDTLKPTE-----VALLYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQ-MSP 56

Query: 61  MQEPRAYLVTVGKRLLVNFHQRRSLEQAYLNALASLPEACVPSPEQRWLLLETLQALDEL 120
           ++EPRAYL ++ + L+++  +RR+LE+AY   LA LPEA VPS E + ++L++L+ LD  
Sbjct: 57  LKEPRAYLSSIARGLMIDQFRRRALERAYQEGLAHLPEAEVPSEEDKLVILDSLERLDRA 116

Query: 121 LDGLPVLVRRAFLWSQLEGLGYRDIAERLDVSERTVKRYMAQAYEHC 167
           L  L   VR+AFL +QL+GL    +A+RL VS  TV+R +A+A   C
Sbjct: 117 LQQLKPRVRQAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKALGAC 163