Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 173 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  156 bits (394), Expect = 2e-43
 Identities = 80/157 (50%), Positives = 112/157 (71%), Gaps = 1/157 (0%)

Query: 14  TLSSLYRDHRSWLESWLRRRLGNAWDAADLSQDTFLRVLASAQPIAQMQEPRAYLVTVGK 73
           ++ +LY DH  WL +WLR +LGNA DAADL+QDTF+R+L   + + Q+  PRA+L TV +
Sbjct: 12  SVQTLYSDHHGWLHTWLRSKLGNAADAADLAQDTFVRLLQRREQL-QLNAPRAFLRTVAR 70

Query: 74  RLLVNFHQRRSLEQAYLNALASLPEACVPSPEQRWLLLETLQALDELLDGLPVLVRRAFL 133
            L+++  +R  L +AYL ALA +PEA VPS E R LLLE L+ +  +LDGL   VRRAFL
Sbjct: 71  GLVIDHWRREELHRAYLEALAHVPEALVPSVETRELLLELLERIARMLDGLKPKVRRAFL 130

Query: 134 WSQLEGLGYRDIAERLDVSERTVKRYMAQAYEHCLLV 170
            +Q EGL ++ IAE++ +S RTV+RY+A A  HC ++
Sbjct: 131 LAQCEGLKHQAIAEQMGISVRTVERYIANALYHCYVL 167