Pairwise Alignments

Query, 404 a.a., MFS transporter from Pseudomonas simiae WCS417

Subject, 510 a.a., Inner-membrane proton/drug antiporter (MSF type) of tripartite multidrug efflux system from Variovorax sp. SCN45

 Score =  128 bits (321), Expect = 4e-34
 Identities = 105/423 (24%), Positives = 182/423 (43%), Gaps = 63/423 (14%)

Query: 10  VSLSLSMLLASLGTSIANVALPSLTRAFDASFHAVQWVVLAYLLAITAVIVSAGRLGDRF 69
           +S+ L+ ++ +L T+IANVALP +  +  AS   + WV+ +Y++A    +   G L   +
Sbjct: 17  ISIMLATIMQALDTTIANVALPHMQGSLQASQDQITWVLTSYIVASAIALPLTGWLCGHW 76

Query: 70  GRRRSLLAGLLLFAVACGLCGMASSLAWLIAARVLQGLGAAVMMAMALGMVGDTVTKART 129
           GRRR  +  ++ F VA  LCG+A+SL  ++AAR+LQG+  A ++ ++  ++ D   + + 
Sbjct: 77  GRRRVFIISVIGFTVASALCGLATSLVGIVAARLLQGIFGAALVPLSQAVLLDINPREKV 136

Query: 130 GRVMGLLGTMSAVGTAMGPSVGGVLLSVWGWRAIFLVGVPLGLVA--------------- 174
           G+ M + G    VG  +GP +GG L   + WR +F + +P+G+ A               
Sbjct: 137 GQAMAIWGAGIMVGPILGPLLGGWLTENFDWRWVFFINLPVGIFAFWGIARYLPESRPQG 196

Query: 175 ------------VALACCYLPVDRP---------------------------HARSSAGS 195
                       +A+    L +DR                            H  +  G 
Sbjct: 197 EKLDIFGFVTLSLAIGMLQLFLDRGEQLDWFDSWEIKLEAAAALVAFGFFVVHTWTVQGV 256

Query: 196 GFWPS--LKDASLRTGLVMSALVAAVIMATFVVGPFYLSRGLGLDPEWMGLVMAVGPCVA 253
            F+    LKD +  TGL+ + +V  ++ AT  + P +L   +G    + G V A      
Sbjct: 257 SFFDRDLLKDRNFVTGLLFAFIVGMILFATMALLPNFLQGLMGYPVVYTGQVTAPRGVGT 316

Query: 254 AITGVPAGRLTDRLGSPRMTLAGLGMMACG-----ALLLSCAWGLFVYLGALVILTTGYS 308
            I  +  GRL  ++    +   G G+ A        L L     L +  G +  L  G++
Sbjct: 317 MIAMIIVGRLVQKVDVRAIMAVGFGLTAFSLYQMTRLTLQMDSTLIIVSGFIQGLGIGFT 376

Query: 309 LFQAANNTAVMGDVEGARRGTVSGLLNLSRNLGLIVGAWALGAVFAWASPDVTRALPQSV 368
                 +TA    +    R   + + +L RN+G  VG   + A+    S      +  +V
Sbjct: 377 FVPL--STATFATLAPRLRNQGTPIFSLLRNIGSSVGISIVQALLTEGSSKAHAQIAATV 434

Query: 369 AYG 371
           A G
Sbjct: 435 APG 437