Pairwise Alignments

Query, 404 a.a., MFS transporter from Pseudomonas simiae WCS417

Subject, 457 a.a., putative transport protein (VIMSS) from Escherichia coli BW25113

 Score =  151 bits (382), Expect = 3e-41
 Identities = 114/400 (28%), Positives = 187/400 (46%), Gaps = 62/400 (15%)

Query: 7   GSLVSLSLSMLLASLGTSIANVALPSLTRAFDASFHAVQWVVLAYLLAITAVIVSAGRLG 66
           G+++++ + + +A L  +IANVALP++     A+  +  WVV AY +AI   ++S   LG
Sbjct: 16  GAILTIVIGISMAVLDGAIANVALPTIATDLHATPASSIWVVNAYQIAIVISLLSFSFLG 75

Query: 67  DRFGRRRSLLAGLLLFAVACGLCGMASSLAWLIAARVLQGLGAAVMMAMALGMVGDTVTK 126
           D FG RR    GL++F ++   C ++ SL  L  ARV+QG G A +M++   ++     +
Sbjct: 76  DMFGYRRIYKCGLVVFLLSSLFCALSDSLQMLTLARVIQGFGGAALMSVNTALIRLIYPQ 135

Query: 127 ARTGRVMGLLGTMSAVGTAMGPSVGGVLLSVWGWRAIFLVGVPLGLVAVALACCYLPVDR 186
              GR MG+   + AV +A GP++   +LS+  W+ +FL+ VPLG++A+ LA  +LP + 
Sbjct: 136 RFLGRGMGINSFIVAVSSAAGPTIAAAILSIASWKWLFLINVPLGIIALLLAMRFLPPN- 194

Query: 187 PHARSSAGSGFWPSLKDASLRTGLVMSA-----------LVAAVIMATFVVG-------- 227
             +R+S      PS    +L  GL+++A           L+AA ++   VVG        
Sbjct: 195 -GSRASKPRFDLPSAVMNALTFGLLITALSGFAQGQSLTLIAAELVVMVVVGIFFIRRQL 253

Query: 228 --------------------------------------PFYLSRGLGLDPEWMGLVMAVG 249
                                                 PFYL   LG      GL++   
Sbjct: 254 SLPVPLLPVDLLRIPLFSLSICTSVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPW 313

Query: 250 PCVAAITGVPAGRLTDRLGSPRMTLAGLGMMACG---ALLLSCAWGLFVYLGALVILTTG 306
           P    +    AG L +R+ +  +   GL +MA G    +LL  +      +  +++   G
Sbjct: 314 PLATMVMAPLAGYLIERVHAGLLGALGLFIMAAGLFSLVLLPASPADINIIWPMILCGAG 373

Query: 307 YSLFQAANNTAVMGDVEGARRGTVSGLLNLSRNLGLIVGA 346
           + LFQ+ NN  ++      R G  SG+L  +R LG   GA
Sbjct: 374 FGLFQSPNNHTIITSAPRERSGGASGMLGTARLLGQSSGA 413



 Score = 37.4 bits (85), Expect = 9e-07
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 10/191 (5%)

Query: 9   LVSLSLSMLLASL-GTSIANVALPS-LTRAFDASFHAVQWVVLAYLLAITAVIVSAGRLG 66
           L SLS+   + S     +A V+LP  L      S      ++  + LA   +   AG L 
Sbjct: 269 LFSLSICTSVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLI 328

Query: 67  DRFGRRRSLLAGLLLFAVACGLCGMASSLAW-----LIAARVLQGLGAAVMMAMALGMVG 121
           +R      LL  L LF +A GL  +    A      +I   +L G G  +  +     + 
Sbjct: 329 ERV--HAGLLGALGLFIMAAGLFSLVLLPASPADINIIWPMILCGAGFGLFQSPNNHTII 386

Query: 122 DTVTKARTGRVMGLLGTMSAVGTAMGPSVGGVLLSVWGWRAIFLVGVPLGLVAVALACCY 181
            +  + R+G   G+LGT   +G + G ++  ++L+ +G     +  +   ++AV  AC  
Sbjct: 387 TSAPRERSGGASGMLGTARLLGQSSGAALVALMLNQFGDNGTHVSLMAAAILAVIAACVS 446

Query: 182 -LPVDRPHARS 191
            L + +P +R+
Sbjct: 447 GLRITQPRSRA 457