Pairwise Alignments

Query, 515 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 504 a.a., RND efflux system, outer membrane lipoprotein, NodT family from Variovorax sp. SCN45

 Score =  209 bits (533), Expect = 1e-58
 Identities = 156/488 (31%), Positives = 233/488 (47%), Gaps = 22/488 (4%)

Query: 37  TTFASKLAPTMGLALLLSACAIGPDYQRPEVVEPAQFKEAQGWRQATPSDSLAR------ 90
           T+ A+ +A   G+ALLL  CA GPDY RP +  P Q+  A           L R      
Sbjct: 5   TSLATPVAA--GIALLLGGCAAGPDYVRPPLNLPTQYTSAPASSTEAEGVPLPRFSPDLD 62

Query: 91  --GAWWELYGDRQLNDLVMRLNTANQTVAQAEARFRQAQALARSSRGAFYPTVDLSVGKT 148
               WW+ +    LN LV++    N T+  A+A  R AQ    + R AF+PTV L    T
Sbjct: 63  VPAQWWQAFRSEPLNALVVQSLAGNPTIEAADAALRVAQENEAADRAAFWPTVALGYSPT 122

Query: 149 RASQGTGSSNASLSSSSSGIRDTLNAQLGVSWEADIWGKLRRGLEANEASAEASSADLAA 208
           R  Q    + AS  SS++ +     AQ+ VS+  D++G  RR +E  +A  E       A
Sbjct: 123 R--QRVAGAVASPVSSNANLYTLHTAQVTVSYTPDVFGATRRQVEGAQAQTEQQRFQTLA 180

Query: 209 MRLSQQSELVQSYLQLRVMDEQTRLLQATLETYQRSLQMTENQYRAGVSGKDAVAQAQTQ 268
            +LS  S +V + +    +  Q R  QA +   +  LQ    Q   G      V   +  
Sbjct: 181 AKLSLSSNVVAAAITEASLRAQQRATQAIIADQKEVLQAYRKQLGLGQVAVADVDAQEAS 240

Query: 269 LKTTQASLIDLIWQRAQLENAIAVLIGEAPANFNLAVSKDIPALP---QIPVSLPSQLLE 325
           L  T+A+L  L  Q AQ  N +A L G  P+   +A   ++ AL    ++P +LPS L+E
Sbjct: 241 LAATEATLPPLDKQLAQQRNLLATLAGRYPSE-GVAAHFELDALQLPGELPRTLPSTLVE 299

Query: 326 RRPDIASAERSVIAANANIGVAKAAYYPDLSLSLAGGYSSSTYADWISLPNRFWSVGPKL 385
            RPD+ +AE  + AA+A IGVA AA  P+++L  + G S+ T +      + FWS+   +
Sbjct: 300 HRPDVRAAEAQLQAASAAIGVAVAARLPNVTLGASYGSSAYTLSQLFKSSSLFWSLAGNV 359

Query: 386 AMTLFDGGQRSAEVDRTVASYDETVAKYRQTVLDGFREVENYMVQLKVLEDEAVVSNEAL 445
             T+FDGG          AS+D+  A+YR TVL  F++V N +  +         + +A 
Sbjct: 360 TQTVFDGGALKHREAAARASFDQAGAQYRATVLSAFQDVANALEAIDADTRALQAAVKAE 419

Query: 446 EAARESLRLTQNQYKAGLIAYLDVVTVQATALSNERTVLTLLQT---RLVASVQLIAALG 502
             A +SL  T+ Q + G  + L +   Q    + ++ +L L+Q    RL  +  L  ALG
Sbjct: 420 RTASQSLARTRTQVRLGDASPLALRIAQQ---AEQQALLNLVQARALRLTDAAALFQALG 476

Query: 503 GGWDGQTP 510
           GGW    P
Sbjct: 477 GGWWNAPP 484