Pairwise Alignments

Query, 1033 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 1043 a.a., RND multidrug efflux transporter; Acriflavin resistance protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  794 bits (2051), Expect = 0.0
 Identities = 445/1033 (43%), Positives = 643/1033 (62%), Gaps = 19/1033 (1%)

Query: 3    LSRLFILRPVATTLSMLAIVLAGIIAYRLLPVSALPQVDYPTIRVMTLYPGASPDVMTSA 62
            L+R FI RP+ + +  + IVL G++A+RLLPVS LP+VD+P I+V    PGASP+ M S 
Sbjct: 4    LARFFIRRPIGSVMLAVGIVLVGLLAWRLLPVSPLPRVDFPVIQVRASLPGASPESMAST 63

Query: 63   VTAPLERQFGQMPGLTQMASTSSGGASVLTLRFNLDINMDVAEQQVQAAINAATNLLPKD 122
            V APLER  G + G+  + S+S+ G++ +TL+FNLD ++D A ++VQAAINA+   LP  
Sbjct: 64   VAAPLERALGSIAGVASIRSSSNQGSTSVTLQFNLDRDIDEAAREVQAAINASRGQLPSG 123

Query: 123  LPAPPVYNKVNPADTPVLTLAITSKTMLLPKLNDLVDTRMAQKIAQISGVGMVSIAGGQR 182
            +   P Y KVNP+  P++ LA++S  +    L D   T +AQK+AQI GVG V++ G   
Sbjct: 124  MTGNPSYVKVNPSQAPIMALALSSPRLPSSALYDNASTVLAQKLAQIVGVGEVTVDGSSL 183

Query: 183  QAVRIKVNPEALAANGLNLSDVRTLIAASNVNQPKGNFDGPTRVSMLDANDQLVSPQQYA 242
             AVR++  PEAL+  G++L DVR  IA +N  +P G  +   +   +     L +   ++
Sbjct: 184  PAVRVQARPEALSHRGMSLDDVRQAIAQANAWRPLGQTEQGGQRWQIALPTPLRTAADFS 243

Query: 243  ELILAYNNGAPLRLKDVAQIVDGAENERLAAWANQNQAVLLNIQRQPGANVIEVVDRIKA 302
            +L++    GA +RL DVA++ D  EN   A + N   AV+L + R+ GAN+++ +D I A
Sbjct: 244  QLVVRNEGGALVRLADVAEVTDSVENRYTAGYHNDRPAVVLLVSRRAGANIVQTIDAIHA 303

Query: 303  LLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRVSATLIP 362
             LP +   LPA  ++ V+ DR+  IRA++++ Q  L+++  LV+ V + FL  V   LIP
Sbjct: 304  QLPQLRALLPADTELRVVMDRSPGIRATLREAQFTLVLSCVLVMAVVWAFLGSVRTALIP 363

Query: 363  SIAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMLENISRYIEEGETPLA 422
            ++A+P+SL+G F VM+  GFS+NNL+LMAL +A G VVDDAIV+LENI R+IE      A
Sbjct: 364  ALALPVSLIGAFAVMWWQGFSLNNLSLMALIVAAGLVVDDAIVVLENIQRHIERARAAQA 423

Query: 423  A--------------ALKGAKQIGFTLISLTLSLIAVLIPLLFMADVVGRLFREFAITLA 468
            A              A  GA ++GFTL+++ L+LI V I +LFM  VV RLFREF+ITL 
Sbjct: 424  ANGQREVGRRTVWRAAFTGAGEVGFTLLAMNLALIVVFISILFMGGVVERLFREFSITLV 483

Query: 469  VAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYKASGAWIDWLIARYGSMLQWVLKHQ 528
             A+LISL VS+TLTP +CA  L   P +         +G   D + A Y   L + L+H+
Sbjct: 484  AAMLISLAVSVTLTPALCAHGLPAGPPKPPGPLARGIAGLLAD-VQAGYARSLGFALRHR 542

Query: 529  PLTLLVAIATLGLTVVLYLVVPKGFFPVQDTGVIQGISEAPQSISFAAMSQRQQELAKII 588
             LTLL+   T+ L V LY+ +PKG  P QDTG + G        SF  M  + +   +++
Sbjct: 543  VLTLLLLAGTVALNVWLYVAIPKGMLPQQDTGQLGGFVRGDDGFSFQGMQPKVEAFRRLL 602

Query: 589  LADPAVESLSSYIGVDGDNATLNSGRLLINLKAHGQRDLSAAQVITRLQPEIDRLVGIRL 648
            +ADPAV  ++   GV G     ++    I LK   +R   A+ V+ RL+    ++ G  L
Sbjct: 603  VADPAVADVT---GVSGGRTGTSNSWFRIRLKPLAERGEPASTVVARLRANAPKIAGGVL 659

Query: 649  FMQPVQDLTIEDRVSRTQYQFSMSSPDAELLALWSDKLVHALSQLPELTDVASDLQDKGL 708
            F+   QD+ +       +Y F M S   + L  W+  +  AL  LPELTDV     +   
Sbjct: 660  FVNVDQDIRLSSGGGDNEYLFVMRSDSLQDLRGWTKPVGEALRALPELTDVDFGAGEDAQ 719

Query: 709  QVYLVIDRDAASRLGVSVSTITDALYDAFGQRQISTIYTQASQYRVVLQAQSGETLGPEA 768
            QV L +DR+AA RLGV + T+T AL +AF QRQ++T+Y   +QYRVV++A       P A
Sbjct: 720  QVVLNVDREAARRLGVRMDTVTTALNNAFSQRQVATLYDPLNQYRVVMEADPRGNSEPAA 779

Query: 769  LNQIHVKTTDGGQVRLSSLAHVEQRQAQLAIAHIGQFPAVMMSFNLAPGVALGKGVELIN 828
            L+Q+ +    G +V LS++A       +  + H  QF +  +S+ LAPGV+L +  + I+
Sbjct: 780  LDQVQLLNDAGERVPLSAIASWRYGLTRDRVQHDAQFASAGISYALAPGVSLQQAQQAID 839

Query: 829  QTQKDIGMPVGVQT-QFQGAAQAFEASLSSTLLLILAAVVTMYIVLGVLYESYIHPITIL 887
            +    + +P  + T +  G   + +A+L     LILA ++T+Y+VLG+LYES +HP+TIL
Sbjct: 840  RAVNGLLLPTSISTGERAGDPNSLQATLKRQPWLILAVLLTVYLVLGMLYESTLHPLTIL 899

Query: 888  STLPSAAVGALLALLLSGNDLGMIAIIGIILLIGIVKKNAIMMIDFALDAERNQGLDPQT 947
            STLPSA VGALLAL +S  +  +IA++G+ LLIG+V KNAI+MIDFAL A+R +GL PQ 
Sbjct: 900  STLPSAGVGALLALRISDTEFSLIALLGLFLLIGVVMKNAILMIDFALAAQRTRGLAPQA 959

Query: 948  AIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTT 1007
            AI++AAL R RPILMT LAAL GAVPL+L  G G+ELR+PLG+ ++GGL VSQ+LTL+TT
Sbjct: 960  AIHEAALRRLRPILMTNLAALLGAVPLVLGLGEGSELRRPLGIAIIGGLAVSQLLTLYTT 1019

Query: 1008 PVIYLYFDRLGRR 1020
            PV+YL  +RL RR
Sbjct: 1020 PVVYLALERLRRR 1032