Pairwise Alignments

Query, 1033 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 1025 a.a., multidrug efflux RND transporter permease subunit MdtC from Escherichia coli ECRC62

 Score =  961 bits (2483), Expect = 0.0
 Identities = 503/1022 (49%), Positives = 707/1022 (69%), Gaps = 8/1022 (0%)

Query: 6    LFILRPVATTLSMLAIVLAGIIAYRLLPVSALPQVDYPTIRVMTLYPGASPDVMTSAVTA 65
            LFI RPVAT L  +AI L GI+ +R+LPV+ LPQVD+P I V    PGASP+ M S+V  
Sbjct: 6    LFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPVIMVSASLPGASPETMASSVAT 65

Query: 66   PLERQFGQMPGLTQMASTSSGGASVLTLRFNLDINMDVAEQQVQAAINAATNLLPKDLPA 125
            PLER  G++ G+++M S+SS G++ + L+F+ D +++ A + VQAAINAA +LLP  +P+
Sbjct: 66   PLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAAQSLLPSGMPS 125

Query: 126  PPVYNKVNPADTPVLTLAITSKTMLLPKLNDLVDTRMAQKIAQISGVGMVSIAGGQRQAV 185
             P Y K NP+D P++ L +TS T    +L D   T++A  I+QI GVG V + G    AV
Sbjct: 126  RPTYRKANPSDAPIMILTLTSDTYSQGELYDFASTQLAPTISQIDGVGDVDVGGSSLPAV 185

Query: 186  RIKVNPEALAANGLNLSDVRTLIAASNVNQPKGNFDGPTRVSMLDANDQLVSPQQYAELI 245
            R+ +NP+AL   G++L DVRT I+ +NV +P+G  +  T    +  ND+L +  +Y  LI
Sbjct: 186  RVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDELKTAAEYQPLI 245

Query: 246  LAYNNGAPLRLKDVAQIVDGAENERLAAWANQNQAVLLNIQRQPGANVIEVVDRIKALLP 305
            + YNNG  +RL DVA + D  ++ R A   N   A+LL I++ P AN+I+ VD I+A LP
Sbjct: 246  IHYNNGGAVRLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRAKLP 305

Query: 306  SITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRVSATLIPSIA 365
             + + +PA +D+ +  DR+ TIRAS+++V+  L+I++ALV++V FLFLR   AT+IP++A
Sbjct: 306  ELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATIIPAVA 365

Query: 366  VPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMLENISRYIEEGETPLAAAL 425
            VP+SL+GTF  MYL GFS+NNL+LMALTIATGFVVDDAIV+LENI+R++E G  PL AAL
Sbjct: 366  VPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHLEAGMKPLQAAL 425

Query: 426  KGAKQIGFTLISLTLSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLTLTPMM 485
            +G +++GFT++S++LSL+AV +PLL M  + GRL REFA+TL+VAI+ISL+VSLTLTPMM
Sbjct: 426  QGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIVISLLVSLTLTPMM 485

Query: 486  CARLLK-REPKEEEQSRFYKASGAWIDWLIARYGSMLQWVLKHQPLTLLVAIATLGLTVV 544
            C  +LK  +P+E+++ R +   G  +  L   YG  L+WVL H  L  +V + T+ L + 
Sbjct: 486  CGWMLKASKPREQKRLRGF---GRMLVALQQGYGKSLKWVLNHTRLVGVVLLGTIALNIW 542

Query: 545  LYLVVPKGFFPVQDTGVIQGISEAPQSISFAAMSQRQQELAKIILADPAVESLSSYIGVD 604
            LY+ +PK FFP QDTGV+ G  +A QSISF AM  + Q+  KII  DPAV++++ + G  
Sbjct: 543  LYISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTG-- 600

Query: 605  GDNATLNSGRLLINLKAHGQRDLSAAQVITRLQPEIDRLVGIRLFMQPVQDLTIEDRVSR 664
               + +NSG + I LK   +R  +A Q+I RL+ ++ +  G  LF+  VQD+ +  R S 
Sbjct: 601  --GSRVNSGMMFITLKPRDERSETAQQIIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSN 658

Query: 665  TQYQFSMSSPDAELLALWSDKLVHALSQLPELTDVASDLQDKGLQVYLVIDRDAASRLGV 724
              YQ+++ S D   L  W  K+   L+ LPEL DV SD QD G ++ LV DRD  +RLG+
Sbjct: 659  ASYQYTLLSDDLAALREWEPKIRKKLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGI 718

Query: 725  SVSTITDALYDAFGQRQISTIYTQASQYRVVLQAQSGETLGPEALNQIHVKTTDGGQVRL 784
             V      L +AFGQRQISTIY   +QY+VV++     T    AL ++ V   +G  + L
Sbjct: 719  DVQAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPL 778

Query: 785  SSLAHVEQRQAQLAIAHIGQFPAVMMSFNLAPGVALGKGVELINQTQKDIGMPVGVQTQF 844
            S  A  +   A L++ H G   A  +SFNL  G +L      I++    +G+P  V+  F
Sbjct: 779  SYFAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSF 838

Query: 845  QGAAQAFEASLSSTLLLILAAVVTMYIVLGVLYESYIHPITILSTLPSAAVGALLALLLS 904
             G AQ F+ +++S ++LI+AA+ T+YIVLG+LYESY+HP+TILSTLPSA VGALLAL L 
Sbjct: 839  AGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELF 898

Query: 905  GNDLGMIAIIGIILLIGIVKKNAIMMIDFALDAERNQGLDPQTAIYQAALLRFRPILMTT 964
                 +IA+IGI+LLIGIVKKNAIMM+DFAL+A+R+  L PQ AI+QA LLRFRPI+MTT
Sbjct: 899  NAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTT 958

Query: 965  LAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRLGRRWRKE 1024
            LAALFGA+PL+L+ G G+ELRQPLG+ +VGGL++SQ+LTL+TTPV+YL+FDRL  R+ ++
Sbjct: 959  LAALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRK 1018

Query: 1025 PQ 1026
            P+
Sbjct: 1019 PK 1020