Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

 Score = 67.8 bits (164), Expect = 1e-16
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 19/174 (10%)

Query: 13  RGDQRALRQLYEQESSHLLGVAMRIARNRSLAEDIVHDAFIKIWRGAGSFDPSRGSAR-- 70
           RGD+RA   L  +    +LG+ +R   +   A+D+  +AFIK +R  G+F   RG +   
Sbjct: 16  RGDRRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNF---RGDSAFY 72

Query: 71  GWVFSVTRHLALNFVRNQYREVPLSDEHEQVA-------ATDTFEFTARS-------GQV 116
            W++ +  + A N++ ++ R  P SD   + A            E   RS       G V
Sbjct: 73  TWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERSLLRDEIEGTV 132

Query: 117 HTCLEQLDPVRRTCILHAYVDGYSHSEIAQKLDTPLGTVKAWIKRSLAALRECM 170
           H  ++QL    RT +     DG S+ +IA  +  P+GTV++ I R+  A+ + +
Sbjct: 133 HRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKAL 186