Pairwise Alignments

Query, 222 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 246 a.a., Putative transmembrane protein from Variovorax sp. SCN45

 Score =  259 bits (663), Expect = 2e-74
 Identities = 130/235 (55%), Positives = 157/235 (66%), Gaps = 18/235 (7%)

Query: 5   LDELASEYVLGTLPGEQRAEVEQRLKHDSELRAAVDAWEQRLLPLTALAEPVPPSSELWR 64
           +D LA EYVLGTL  + RA VE R++ +  LR AV AWE RLLPL +LA P  PS  LW 
Sbjct: 13  IDALAGEYVLGTLSADARAAVEARMRDEPALRDAVQAWEARLLPLASLAAPADPSPALWS 72

Query: 65  RIERNIASAGT-----------------RWWDLLAVWRGLAGAGLLTTLVLAGLLLTRPP 107
           RIER + SA                    WW+ L +WRGLA  G     ++  +L+TRPP
Sbjct: 73  RIERTLGSAAAASPNARKAEPARASGFANWWNNLQLWRGLAAGGFAAAALMVAVLVTRPP 132

Query: 108 TAAPSFVVVLVAPQSQAPGWVIQASNDQQIQLIPLGVMEVPADKALQFWTKGDGWQGPVS 167
              P ++VVLVAPQ ++PGWVIQ ++ +Q+ L+PLG +EVP  K LQFWTK D W+GPVS
Sbjct: 133 PT-PQYMVVLVAPQDKSPGWVIQTTSSRQLSLVPLGTIEVPPQKTLQFWTKADQWRGPVS 191

Query: 168 LGLVTPGQTLSVPLDKLPPLTQNQLFELTLEDPRGSPTGKPTGPIQAIGRAVKVL 222
           LGLV  GQTL +P+DKLPPL  NQLFELTLE   GSP  +PTGPIQ IGRAVKVL
Sbjct: 192 LGLVKQGQTLRIPIDKLPPLEPNQLFELTLEPENGSPIDRPTGPIQFIGRAVKVL 246