Pairwise Alignments

Query, 222 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 233 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  258 bits (659), Expect = 7e-74
 Identities = 133/223 (59%), Positives = 159/223 (71%), Gaps = 6/223 (2%)

Query: 5   LDELASEYVLGTLPGEQRAEVEQRLKHDSELRAAVDAWEQRLLPLTALAEPVPPSSELWR 64
           LD LA EYVLGTL  EQ A   +RL+ D  LRAAVDAWE RLL LTAL+ P PPS  LWR
Sbjct: 12  LDSLAGEYVLGTLSPEQYAVTAERLRTDPALRAAVDAWEARLLELTALSTPQPPSPRLWR 71

Query: 65  RIERNIASAGT-----RWWDLLAVWRGLAGAGLLTTLVLAGLLLTRPPTAAPSFVVVLVA 119
           RI+R++          RWW  L +W+GL+ AGL  +L+LA  LLT P +    ++VVLVA
Sbjct: 72  RIQRSLDELPAPRMQARWWQRLGLWQGLSAAGLAASLLLAFTLLTTPASTT-EYLVVLVA 130

Query: 120 PQSQAPGWVIQASNDQQIQLIPLGVMEVPADKALQFWTKGDGWQGPVSLGLVTPGQTLSV 179
           P SQAPGWV+QAS+   I+L+PLG  +VP   ALQFWTKG+ W+ PVSLGLV PG+   V
Sbjct: 131 PNSQAPGWVVQASDSHMIELLPLGKDKVPDGMALQFWTKGEQWRAPVSLGLVKPGEPYRV 190

Query: 180 PLDKLPPLTQNQLFELTLEDPRGSPTGKPTGPIQAIGRAVKVL 222
           PL+ LPPL  NQLFELTLE   GSPTG PTGP++ IGRAVKV+
Sbjct: 191 PLESLPPLEANQLFELTLEKAGGSPTGLPTGPVKFIGRAVKVI 233