Pairwise Alignments

Query, 380 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  508 bits (1307), Expect = e-148
 Identities = 261/370 (70%), Positives = 310/370 (83%), Gaps = 1/370 (0%)

Query: 8   PFCLLAL-TLALSACGDSAAEAPEMPLAKVRVETLEAKPLAITSELSGRIAAPRIAEVRA 66
           P  L+AL +L+L+ C DSA    + P A+VRVETL+ +PLAI+SELSGRI APR AEVRA
Sbjct: 11  PLALMALLSLSLAGCSDSAEPDEQAPTAQVRVETLQLQPLAISSELSGRILAPRTAEVRA 70

Query: 67  RVAGVVMQRVFKEGHDVKQGDVLFRIDPAPFKADLDSAQANLSKAEADAFKARLQEQRYS 126
           RVAGVV++RV++EG DVKQGDVLF IDPAPFKAD DSA+A L+KAEA  ++ARLQEQRY 
Sbjct: 71  RVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQEQRYR 130

Query: 127 QLVEGNAISGQDYDNARAAVRQTNAEVAANKAAVERARLNLGYATVTAPISGRIGRALVT 186
           +LV+  A+S Q+YDNA+A+  Q +AEVA  +AA+ERARLNLGYATVTAPISGRIGRA VT
Sbjct: 131 ELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIGRAQVT 190

Query: 187 EGALVGQNEATPLALIQQLDPIHADLTQSTRELNDLRRAFRAGSLKQVGQDQAKATLIED 246
           EGALVGQNE TPLA IQQLDPIHAD+TQSTRELN LRRA RAG L+QVG  QA+ATLI+D
Sbjct: 191 EGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQVGDGQARATLIQD 250

Query: 247 DGSLYPLPGKLLFAEISVDPGTGQIILRSEFPNPDLDLLPGSFVRVRLEQAVDKQGISVP 306
           DGS YPLPGKLLF++ISVDP T QI LRSEFPNPDLDLLPGS+VRVRLEQAV  +G+SVP
Sbjct: 251 DGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPKGLSVP 310

Query: 307 QRAITRDSAGIPMVLLLDAGQTVSQQPVELGAVINDRWIVSSGLKPGDRIIVEGLQHARP 366
           QRAI RDSAG+P VL++D    VS + V LG+   DRWIVS GL  G+R++VEGLQH + 
Sbjct: 311 QRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVEGLQHVKA 370

Query: 367 GEKVEVDDSP 376
           G++V+VD++P
Sbjct: 371 GDQVQVDNTP 380