Pairwise Alignments

Query, 1030 a.a., acriflavine resistance protein B from Pseudomonas simiae WCS417

Subject, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

 Score = 1244 bits (3220), Expect = 0.0
 Identities = 636/1031 (61%), Positives = 793/1031 (76%), Gaps = 4/1031 (0%)

Query: 1    MPQFFIDRPIFAWVVALFILLAGLLAIPQLPVAQYPNVAPPKVEIYAVYPGASAQTLDES 60
            M +FFI RP FAWVVALFI LAGLL IP LPVAQYPNVAPP++ I A YPGASA+ + ES
Sbjct: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60

Query: 61   VVSLIEQELNGADHLLYFES-QSSLGSATITATFQPGTNPEMAQVDVQNRLKAVEPRLPQ 119
            V S+IEQ LNGA  LLY+ES  +S G A +  TF+PGT+P+MAQVDVQNRLK  E R+PQ
Sbjct: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120

Query: 120  AVTQQGLQVEKVSAGFLLLVTLTSNDGKLDDV-ALSDYLARNVMNELKRLDGVGKAQLYG 178
            AV  QGL+VE+ S+GFLL+  LTS  G   D  AL+DY ARN+ NEL R+ GVGK Q + 
Sbjct: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180

Query: 179  AERAMRVWIDPQKLIGFNLTPADVNAAISAQNAQVSAGSIGDLPGTNTQEITAAILVKGQ 238
            +E AMRVW+DPQKL+G+ L+  D+N+AI  QN QV AGS G  PG + QE+TA + V+G 
Sbjct: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240

Query: 239  LSTPAEFADIVLKANPDGSTVRIGDVARVEVGSQEYQFSTRLNGKPSTAVSVQLSPGANA 298
            L TP  FA IVL+ANPDGS+VR+GDVAR+ +GS+ Y  S RLNG P+ A +VQL+PGANA
Sbjct: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300

Query: 299  LNTATLVRAKMDELSRYFPANVEYKIPYDTSPFVKVSITKVVYTLLEAMALVFAVMFLFL 358
            + TATLV+ ++ ELS++FP  VEY +PYDTS FV V+I KV++TL+EAM LVF VMFLFL
Sbjct: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360

Query: 359  QNVRYTLIPTLVVPIALMGTFATMLLLGFSINVLTMFGMVLAIGILVDDAIVVVENVERI 418
            QNVRYTL+P++VVP+ L+GT   M LLGFS+N++TMFGMVLAIGILVDDAIVVVENVER+
Sbjct: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420

Query: 419  MATEGLSPKEATKKAMGQITGAIIGITLVLVAVFLPMAFMAGSVGVIYQQFSLSMATSIL 478
            MA EGLSP EAT KAMGQ++GAIIGITLVL AVFLP+AFM+GSVGVIYQQFS+S+A SIL
Sbjct: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480

Query: 479  FSAFLALTLTPALCATLLKPIAKGEHHAKGGFFGWFNTRFEQLTDRYEGWVAYALKRSGR 538
            FS FLALT TPALCATLLKP+  G HH K GFFG FN  F ++T+RY    +  + R+GR
Sbjct: 481  FSGFLALTFTPALCATLLKPVPHG-HHEKAGFFGAFNRGFARVTERYSLLNSELVARAGR 539

Query: 539  YLLIYLVLLVGLGWMFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVAEQIEAHNAE 598
            ++L Y+ +LV LG+ + RLP +F+P ED GY++ D+QLPPGAS+ RT   AE +E     
Sbjct: 540  WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLMS 599

Query: 599  EPGVGDTTMIMGFSFSGSGQNAALAFTTLKDWSERSSDDSASSIADRANMAFSELKDAIA 658
               V ++ ++ GFSFSG G NAALAF T KDWS+R    SA +     N  F+   D   
Sbjct: 600  RDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQSAEAETAAINAQFAANGDGAI 659

Query: 659  YAVLPPPVDGLGTSSGFEFRLQDRGGVGHAALMAARTELLAAAEKSPILANVRESALAEA 718
             AV+PPP+DGLG S GF  RL DRGG+G  AL+AAR +LLA A  +P++       LAEA
Sbjct: 660  TAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEGLAEA 719

Query: 719  PQVQLEVDRKQANALGVSFADVGNVLSSAIGSAYINDFPNQGRMQRVVVQAEGDQRSQVA 778
            PQ++L +DR++A ALGVSF  + + L++A GSA INDF N GR QRVVVQAE  +R    
Sbjct: 720  PQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGERMTPE 779

Query: 779  DLMKINVRNNAGKMVPLSAFVEAKWTQGPTQLTRYNGYPAIAISGEAAPGHSTGEAMDEI 838
             ++++   N  G+ VP SAFV  +W +GP QL RYNGYP+I I+G+A+PGHSTG+AM E+
Sbjct: 780  SVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQAMAEM 839

Query: 839  QRLVSQLPAGLGQEWTGLSLQERLSGAQAPLLLGLSLLIVFLCLAALYESWSIPTSVLLV 898
            +RLVS+LP G+G  WTGLS QE++S  QA  L  L++L+VFL L ALYESW+IP +V+L+
Sbjct: 840  ERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLTVMLI 899

Query: 899  VPLGVLGAVIAVGLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKDLYDQGEDLVTATL 958
            VP+G LGAV AV L GMPNDV+FKVGLITIIGL+AKNAILI+EFAK+L+++G  L  A +
Sbjct: 900  VPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLCDAAI 959

Query: 959  KAARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITAT-LAVVFVPVF 1017
            +AARLR RPI+MTS+AFILGVVPLAIA+GA +ASQ+AIGTGVIGGM++AT L VVFVPV 
Sbjct: 960  EAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVVFVPVC 1019

Query: 1018 FVVVMKLMKKK 1028
            FV V+ L+K+K
Sbjct: 1020 FVWVLTLLKRK 1030