Pairwise Alignments

Query, 331 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 328 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

 Score =  163 bits (413), Expect = 5e-45
 Identities = 108/320 (33%), Positives = 158/320 (49%), Gaps = 11/320 (3%)

Query: 5   SLSEAEYDAITDAAAHWCMRLHAVDCTASERQAFEQWHDAHPLHAFEYAAMLEIWDVADH 64
           S+ +   DA+ + AA W  R+      A   +    W  +   H  EY  +  +W  AD 
Sbjct: 8   SMKQHGTDAVREQAAAWFARVQDAPRDAGLHKQLHAWLASDEHHREEYEHLCRVWQAADF 67

Query: 65  LPRNEPTATVVPFK----PRRRLRTYAVAAAICLVALPLAAFTGWEAGWLPSSYERFDAT 120
           +PR    A   P      PRRR    A+AA++ +VAL L  ++GW    L        A 
Sbjct: 68  IPRQHLEALCRPDPVQQLPRRRFMRQALAASVAVVALGLG-WSGWHHLQLNHQGSLQTAF 126

Query: 121 HGLRQVTLGDGSQVELNLGTQLVYSNYKDQRRVTLKKGEAFFKVSHDTAHPFIVHAGEGQ 180
           +  RQV L DGS +ELN  TQL       QR V L  GE  F V+HD+  PF+V   +G 
Sbjct: 127 NERRQVELPDGSHLELNGNTQLQVEFSAGQRHVRLNAGEVMFSVAHDSNRPFVVDTAQGS 186

Query: 181 VRVTGTQFNVWKYEDQVRVTLLEGSVQISSDKVHGSVPLTPGMQANYQHGDATPRVRTMS 240
           V VTGT+F+V       RV + +GSV++   K      LT G  +   H DA   V    
Sbjct: 187 VIVTGTRFDVRLDPASTRVAVEQGSVRVQG-KGDSPAQLTAGQGS---HIDAQGLVAAPY 242

Query: 241 PNDTA--LAWRQGKLILDNLALADALPLINRYLSKPVMLADANTGTIRIGGIYNINEVNN 298
             +T    AWRQGKL+ DN  LA+ +   +RY  +P+ +A      +R+ G ++ N+ + 
Sbjct: 243 AVNTGAITAWRQGKLVFDNATLAEVVAETSRYRRQPLRVAPGKVARLRLSGTFSTNDTDA 302

Query: 299 LVPSLPKVLPVYLTQNQDGN 318
           L+ +LP +LPV +  ++DG+
Sbjct: 303 LLRALPSILPVAIKAHEDGS 322